| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | XfasM23_2246 |
|---|
| Symbol | |
|---|
| ID | 6204178 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Xylella fastidiosa M23 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010579 |
|---|
| Strand | - |
|---|
| Start bp | 19363 |
|---|
| End bp | 21420 |
|---|
| Gene Length | 2058 bp |
|---|
| Protein Length | 685 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 641703800 |
|---|
| Product | DNA topoisomerase III |
|---|
| Protein accession | YP_001830952 |
|---|
| Protein GI | 182682754 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0550] Topoisomerase IA |
|---|
| TIGRFAM ID | [TIGR01056] DNA topoisomerase III, bacteria and conjugative plasmid |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.205011 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCGTTTAT TCATTGCAGA GAAGCCATCT GTTGCCAAAG CAATTGCCGG TGAGCTGGGT
GTGACAGGGA AGGGTAATGG TTACATTGAA TGTGGTCACG ATACGATCAC TTGGTGTTTC
GGACACATGC TCGAACAAGC TGAGCCAGAT GCGTACATTT CTGAAGACGT TCCACTGAAT
CCAAAAACTG GTAAGAAAAT CTGGCGCGTC GAAGAACTGC CTATCATTCC TGAAACGTGG
ATCATGCAGC CCCGCGAAGA CGCGAAAGCG CAGCTTGAGG TCATCAAGCG GCTGCTGAAA
AAGGCAACTG AAATTGTCAA TGCTGGTGAC CCAGACCGTG AGGGGCAGTT ACTCGTTGAT
GAAGTGCTGG AATACTTCGA CTGCCACAAG TCAGTGCAAC GCTTCTGGGT ATCGGCACAA
GATTCCGTAT CGGTGCAGCG TGGCCTAGCT GCGCTCAGAA GTAACACTGA GTATCAAGGC
TTTGCCAATG CAGCACGGGC ACGTAGTCGG GCCGACTGGC TGATTGGTAT CAATTTCAGC
AGGGCTTATA CGCTACGCGC ACAGCGCGGG GGTTCGCGTG CATTGCTGAC GATAGGGCGT
GTACAGACTC CAACGCTGGC GCTGGTGGTC ATGCGTGATC GTGAGATTGA GGCATTCAAA
TCGATTCCTT ACCACACGAT CCGTGGAGCA TTTAAACACG AGGGTGGTGT ATTCGTTGCC
GTTTGGCGGG CGAAAGAAGA TCAAGTTGGG CTAGACCAAG AGGGTCGTTT GGTCGACACG
GTCATCGCGA ACACGTTGGT CGAATCCATC ACCGGTCATA TAGGTAAGGT CATCGAGTAC
AAGCAGGAGC CAAAGAAGAA GGCACAGCCG CGTGCTTATT CACTTTCTGA CATTACTCTC
TTGGCGTCTA ACAAATTCGG GTATAGCGCG GCAGATGTGC TTGAGGTGTG CCAATCGCTT
TATGAGACAC ATAAGCTCAC GAGCTACCCA AGAACCGATT GTGGGTACCT GCCGGAATCA
CAACATGCCG ATGCCCCACA CGTGCTCGAA GCCATCAAGC ACGTTTATCC AGAGGTTGCT
GTGCTTGTTG ATGGGGCCAA TCAGAACATT AAGTCCAAGA CTTGGGATGA CAGCAAAATT
ACCGCTCATC ACGGCATTAT CCCGACGATG CACAAGGGCA GTATGGCTAG TCTGTCCGAG
AAAGAGCGCA ACATCTACGA CTTAATTGTG CGTGTTTATC TTGCACAGTT CTATTTGCAG
CACGAATACC TTGCCACCAC CGTTACCCTC GAAGTTGCTG GTGAGCGATT TGATGTAGGA
GGCAAGGTCG TGACCCGTAA CGGTTGGCGT GACGTGTACA TCGAGGCCGA GGAAGAAGCC
GAGGGTGAGT CTGAGTCTGG AATCAACAAC CAGGCGTTAC CAAATATGCA GAATGGTGAT
GTGGTGTCAT GCGTGAAGGC GACACGCATG GATGCTAAGA CAAAAGCCCC AAGCCGTTTC
ACCGAGGGAA CGCTGACACG TGCTATGGAG AATATCCACA AATATGTTAC GGATGCCGAG
CATAAGAAAC TGTTGCGTGA CGGCGATGGC ATAGGCACTT CCGCCACACG GGCGTCGATC
ATTTCTGAAT TGAAGCGGCG CCAATTTCTC GAAGTGAAAG GCAAGCAGAT CGTTAGCACG
ACCTTGGGGC GCAGCATGAT TGATGCGCTT CCGGAAGTCG TGAAAAGCCC AGTGCTCACT
GCTTTGTATG AACGCATGTT GCTGTCCATC GGAGAAGGTC GTTTGGAGGT GGACAGTTTC
ATTACGAAGC AAGAGGCATT TATTCGCGAA CAAATTGCGA AGGCTAATGA TGGCGCATTG
AAGCTTAATG GTGCGAAGGA AGCAGTGAAG GTATCGGAGA CCCATAAGTG CATGGTCTGC
GGTAAAGGGC TTGTCCGTCG CCTCGGCAAA AAGACTGGTA CTAATTTCTG GTCGTGCAGT
GGCTATCCCA CTTGCTCGCA GACGTATCCC GACGTCAAGG GAAAACCTAA CTACACCATC
CAACGTAAGG AGGCATGA
|
|---|
| Protein sequence | MRLFIAEKPS VAKAIAGELG VTGKGNGYIE CGHDTITWCF GHMLEQAEPD AYISEDVPLN
PKTGKKIWRV EELPIIPETW IMQPREDAKA QLEVIKRLLK KATEIVNAGD PDREGQLLVD
EVLEYFDCHK SVQRFWVSAQ DSVSVQRGLA ALRSNTEYQG FANAARARSR ADWLIGINFS
RAYTLRAQRG GSRALLTIGR VQTPTLALVV MRDREIEAFK SIPYHTIRGA FKHEGGVFVA
VWRAKEDQVG LDQEGRLVDT VIANTLVESI TGHIGKVIEY KQEPKKKAQP RAYSLSDITL
LASNKFGYSA ADVLEVCQSL YETHKLTSYP RTDCGYLPES QHADAPHVLE AIKHVYPEVA
VLVDGANQNI KSKTWDDSKI TAHHGIIPTM HKGSMASLSE KERNIYDLIV RVYLAQFYLQ
HEYLATTVTL EVAGERFDVG GKVVTRNGWR DVYIEAEEEA EGESESGINN QALPNMQNGD
VVSCVKATRM DAKTKAPSRF TEGTLTRAME NIHKYVTDAE HKKLLRDGDG IGTSATRASI
ISELKRRQFL EVKGKQIVST TLGRSMIDAL PEVVKSPVLT ALYERMLLSI GEGRLEVDSF
ITKQEAFIRE QIAKANDGAL KLNGAKEAVK VSETHKCMVC GKGLVRRLGK KTGTNFWSCS
GYPTCSQTYP DVKGKPNYTI QRKEA
|
|---|
| |