| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | XfasM23_2230 |
|---|
| Symbol | |
|---|
| ID | 6204161 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Xylella fastidiosa M23 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010579 |
|---|
| Strand | + |
|---|
| Start bp | 3605 |
|---|
| End bp | 4495 |
|---|
| Gene Length | 891 bp |
|---|
| Protein Length | 296 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 641703784 |
|---|
| Product | conjugal transfer protein TrbG |
|---|
| Protein accession | YP_001830936 |
|---|
| Protein GI | 182682738 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3504] Type IV secretory pathway, VirB9 components |
|---|
| TIGRFAM ID | [TIGR02775] P-type conjugative transfer protein TrbG |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 31 |
|---|
| Plasmid unclonability p-value | 0.938965 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCAAAAGA CTTTAATCTC CGCTCTGATT CTCGGCTTAG TGCCGATGGT GACATTCGCA
GCTCCTGGCA CCGACCCGTT GGCCGATCAG TATTTCTCGA AAAACGAGCC GAAGTTGACG
ACGCAGGAGA AGGCGGCTGT CGCTATTGGC AAAAAGTGGC AGGAGAGTCA GGACCTCAAG
CCGTTCCAAG GTTCTGACGG TTCGATCAAC TGGCCGTACT TACCTGGCAA GCAATACCCG
ATCATGTGTG CAGTGCTGCA AGTCTGTGAC ATTGCTTTAC AGCCAGGTGA GAATGTCAAT
GGCACGAACA TTGGCGATCC TCGCTATCAT GTTGAGCCAG CCGTCACAGG TTCAGGTGCG
TCGCAAATAA TACATCTGAT CTTGAAGCCT CTTGATGTGG GTCTTGATAC GACGCTCGTG
CTCACCACGG ATCGGCGCAC GTATCACTTT CGCCTGCGTT CTAGTCGCAC GCAGCTCATG
CCGTTTGTAT CGTTCACGTA TCCCGAAGAC GCGATGGCGA AATGGGATGC AATCAAAGCC
CGCGAAACAA AGGTACGCCA GGACAATACT ATTCCGCATA CCGGTGAGTA CCTGGGGAAC
CTCAGCTTTG ATTACGTAGT GAGCGGTTCG GCTCGCTGGA AGCCGGTTCG GGTCTACAAC
GATGGCCGTA AAACCATCAT CGAAATGCCT TCAAAAATGC AACAAAGTGA AGCGCCAGCA
CTGCTTGTCG TCCATAAGGA CGGAAGCCTG TTCAAAGATG ATGAGACGCA AATGGTGAAC
TATCGCATTC AAGACGCCCG CTACATCGTA GATACGATCT TTGACAAAGC GATCCTCGTA
TCCGGTGTTG GTTCGAGTCA ACAGAAGGTA ACGATCACGA GGGGGAACTA A
|
|---|
| Protein sequence | MQKTLISALI LGLVPMVTFA APGTDPLADQ YFSKNEPKLT TQEKAAVAIG KKWQESQDLK
PFQGSDGSIN WPYLPGKQYP IMCAVLQVCD IALQPGENVN GTNIGDPRYH VEPAVTGSGA
SQIIHLILKP LDVGLDTTLV LTTDRRTYHF RLRSSRTQLM PFVSFTYPED AMAKWDAIKA
RETKVRQDNT IPHTGEYLGN LSFDYVVSGS ARWKPVRVYN DGRKTIIEMP SKMQQSEAPA
LLVVHKDGSL FKDDETQMVN YRIQDARYIV DTIFDKAILV SGVGSSQQKV TITRGN
|
|---|
| |