| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | XfasM23_2228 |
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| Symbol | |
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| ID | 6204185 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Xylella fastidiosa M23 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010579 |
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| Strand | + |
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| Start bp | 311 |
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| End bp | 2875 |
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| Gene Length | 2565 bp |
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| Protein Length | 854 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 641703782 |
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| Product | conjugal transfer protein TrbE |
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| Protein accession | YP_001830934 |
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| Protein GI | 182682736 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3451] Type IV secretory pathway, VirB4 components |
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| TIGRFAM ID | [TIGR00929] type IV secretion/conjugal transfer ATPase, VirB4 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.0444639 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTTTCAAA TAATCACCAT TGCAATCGCA TTGCTTGGTA CGGTGCTGCT CATCTGGTTG
TTCTTGCTTG TGCAGCGTGC CAATGCCGAT TTGCGGCTGA AAAATCATCG TTCCAAGGAT
GCTGGACTTG CTGATCTTCT CAATTATGCC GCTGTCGTGG ATGATGGCGT AATCGTTGGC
AAGAACGGCT CGTTCATGGC GTCGTGGTTG TACCGCGGTG CTGATAACGC CAGTGCTACG
GAAGCTGAGC GGGAGCTTAT CTCCTTTCGT ATCAACCAAG CGCTTGCATC ATTTGACAAT
GCTTGGATGG TTCACGTCGA TGCAGTGCGC CGACCCGCTC CAAGTTACAG CGATCCAAGT
CTTTCTCATT TTCCTGATGC GGTTTCGGCA GCAGTCGATG AGGAGCGTAG ACGATTGTTC
GAGAGCATAG ACACGTTGTA CGAAGGATTC TTCGTAGTCA CGGTCACGTG GTTTCCCCCT
GTGTTGGCCG AACGCAGATT TGTGGAACTC ATGTTCCATG ATGATGCTGA AAAGCCCAAC
GATAAGACGC GCACCGCACA CCTTATCGAC CACTTCAAGC GGGAGGTGAT TAATCTCGAA
AACAGACTTT CCTTGGCTGT TGAGCTTGAA CGTTTGCGAG GCGTAAAAAT AACTAAGGAA
GATGGTTCGA CTGTAACGCA CGATCAGCAA TTGCAGTGGC TCCACTTCTG TGTAACTGGC
CTGAATCATC CGATACAGCT CCCAAGCAAC CCTATGTACA TTGACTCGCT CATCGGCGGG
CAAGAGCTAT ACCCTGGTGT TGTCCCAAAA ATCGGTCGCA ATTTCATCCA GGTTGTCGCT
ATCGAAGGGT TTCCCTTGGA GTCATATCCA GGAATCTTAT CGGTATTGGC CGAATTGCCT
ATCGAATATC GGTGGTCTTC TCGGTTCATT TTTCTTGATC ATCACGAGGC TGTGTCTCAT
CTCGAGAAAT TCCGTAAAAA GTGGAAGCAG AAAATGCGTG GTTTCTTCGA CCAGGTATTC
AATACGAATA CCAGTCACGT CGATGAAGAC GCGGTTTCGA TGGTGGCCGA TGCCTCATCA
GCGATTGCTG AAACGAACAG TGGCCTGGTT TCGCAAGGCT ACTACACCAG TGTTGTCGTA
CTGATGAATG AAAGTCGCGA GCAAGTAGAA CAGTCGGCTC GACGACTTGA AAAGGCAATC
AACGCCTTGG CATTTACTGC GCGTGTCGAA ACGATCAACA CGATGGACGC CTATCTTGGC
TCTCTTCCAG GGCATGGTGT TGAGAACGTG CGTCGTCCTT TGTTGAATAC GATGAATTTT
GCCGATCTGC TGCCGACCAG TACGATTTGG ACAGGTGAAA ATCGTGCACC ATCACCGCTT
TTCCCTCCTA ACGCTCCGCC CTTGCTGCAT GGCGTGACGA GTGGAAACTC TCCTATGCGT
ATCAATTTGC ATGTGCGTGA TCTTGGCCAT TGCATTATTT TCGGCCCAAC CAGGACGGGA
AAATCGACCA AGCTGGCTTT GGTGGCATTC CAGTGGCGTC GTTATCTAGG TGCACGCATC
TACGCTTTCG ACAAGGGTTT GTCGATGTAT CCGACATGTA AAGCCATGCA TGGTCATCAT
TTCAGTATTG CATCGAACAC TGACAAGCTT GCGTTTGCGC CATTGTCGCG ACTTGATACT
CGCACCCGCC GCGCATGGGC AATGGAATGG ATTGATACGA TCCTTGCCTT GAATGGTGTG
ATTACAAGTC CTGCACAGCG CAACGCGATT GCCGAAGCGA TCCTCAGTAT GAGTAAGAGT
AAAGCATCCA CGTTGTCAGA GTTTATTGTG ACCGTGCAGG ACGAAGTGAT CCGCGAAGCT
CTCAAGCCGT ACACCGTGGA CGGCAACATG GGATACCTTC TCGACGCAGT GGAAGATGGC
CTTGAACTGG CCGACTTCAT GACATTTGAG ATTGAACAGT TGATGGGTCT TGGCGAGAAG
TTTGCTCTGC CTGTTCTGCT GTACCTGTTC ATGCGGATCG AAGAATCATT GAGTGAGGAA
GATGCACGAC CCACACTGCT GATTCTTGAT GAGGCTTGGC TGATGCTTTC TCACACAACA
TTCCGCGACA AGATCGAGGA ATGGCTGCGC TCAATGGCGA AGAAGAATTG CTCGGTACTC
ATGGCAACGC AGAGCATTTC CGAGGCTGCA AAGTCCGGCA TTTTGGACAT CATCACGGAA
TCGACCGCCT GCCGGATATT CCTGGCCAAC CCGAATGCGC GTGAGGAAAA GACTGCCGAG
ATTTACGGTC GCCTTGGCTT AAACAATCGT CAGATTGAAA TCATCGCATC AGCCGTGCCG
AAACGTGACT ACTACTATGT CTCTGAAAAG GGGCGTCGCC TGTACCAGCT TGCGCTTGGA
CCCCTTGCTC TGGCTTTCGT GGGGTCTACC GATAAGGAGT CTATCGCAAT GATCAGGAAG
CTCGAAGCGC TGCACGGTGA TGCCTGGGTA CATGAGTGGC TGCGCCTTAA GGGTCTGCGC
CTTGATGAAT ACGTGAGTCC CAATGACTAT GGAGTAGCAG CATGA
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| Protein sequence | MFQIITIAIA LLGTVLLIWL FLLVQRANAD LRLKNHRSKD AGLADLLNYA AVVDDGVIVG
KNGSFMASWL YRGADNASAT EAERELISFR INQALASFDN AWMVHVDAVR RPAPSYSDPS
LSHFPDAVSA AVDEERRRLF ESIDTLYEGF FVVTVTWFPP VLAERRFVEL MFHDDAEKPN
DKTRTAHLID HFKREVINLE NRLSLAVELE RLRGVKITKE DGSTVTHDQQ LQWLHFCVTG
LNHPIQLPSN PMYIDSLIGG QELYPGVVPK IGRNFIQVVA IEGFPLESYP GILSVLAELP
IEYRWSSRFI FLDHHEAVSH LEKFRKKWKQ KMRGFFDQVF NTNTSHVDED AVSMVADASS
AIAETNSGLV SQGYYTSVVV LMNESREQVE QSARRLEKAI NALAFTARVE TINTMDAYLG
SLPGHGVENV RRPLLNTMNF ADLLPTSTIW TGENRAPSPL FPPNAPPLLH GVTSGNSPMR
INLHVRDLGH CIIFGPTRTG KSTKLALVAF QWRRYLGARI YAFDKGLSMY PTCKAMHGHH
FSIASNTDKL AFAPLSRLDT RTRRAWAMEW IDTILALNGV ITSPAQRNAI AEAILSMSKS
KASTLSEFIV TVQDEVIREA LKPYTVDGNM GYLLDAVEDG LELADFMTFE IEQLMGLGEK
FALPVLLYLF MRIEESLSEE DARPTLLILD EAWLMLSHTT FRDKIEEWLR SMAKKNCSVL
MATQSISEAA KSGILDIITE STACRIFLAN PNAREEKTAE IYGRLGLNNR QIEIIASAVP
KRDYYYVSEK GRRLYQLALG PLALAFVGST DKESIAMIRK LEALHGDAWV HEWLRLKGLR
LDEYVSPNDY GVAA
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