| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | XfasM23_2227 |
|---|
| Symbol | |
|---|
| ID | 6204153 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Xylella fastidiosa M23 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010579 |
|---|
| Strand | + |
|---|
| Start bp | 3 |
|---|
| End bp | 323 |
|---|
| Gene Length | 321 bp |
|---|
| Protein Length | 106 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 641703781 |
|---|
| Product | conjugal transfer protein TrbD |
|---|
| Protein accession | YP_001830933 |
|---|
| Protein GI | 182682735 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG5268] Type IV secretory pathway, TrbD component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 0.00500311 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCACTAC GTACTATCCC TATTCGTAGG GCTGGAAACA GAGACAACCT TTTCATGGGT
GGGGATCGTG AAATGGTCAT GTTCTCTGGT TTGCTGTGTG CGGTTCTCAT TTTTGTGGCG
CAAGACTGGA TTGCAGCAGG ATTTGGCCTT GGCATGTGGT TCATTGCCCT TTGGCTTTTA
AGAAAGATCG CCAAAGCTGA CCCTCGGATG CGTTTTGTCT ACATGCGTAA TCGACGTTAC
AAGGCTTATT ACCCGCCACG TGCGACGCCG TTCCGCAACA ACACGGTTTT CCAAGGGAGC
CAATACAAAT GTTTCAAATA A
|
|---|
| Protein sequence | MALRTIPIRR AGNRDNLFMG GDREMVMFSG LLCAVLIFVA QDWIAAGFGL GMWFIALWLL
RKIAKADPRM RFVYMRNRRY KAYYPPRATP FRNNTVFQGS QYKCFK
|
|---|
| |