| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | XfasM23_2156 |
|---|
| Symbol | |
|---|
| ID | 6203081 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Xylella fastidiosa M23 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010577 |
|---|
| Strand | - |
|---|
| Start bp | 2435087 |
|---|
| End bp | 2436721 |
|---|
| Gene Length | 1635 bp |
|---|
| Protein Length | 544 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 641703670 |
|---|
| Product | ATP-dependent RNA helicase RhlB |
|---|
| Protein accession | YP_001830826 |
|---|
| Protein GI | 182682666 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis
[K] Transcription
[L] Replication, recombination and repair |
|---|
| COG ID | [COG0513] Superfamily II DNA and RNA helicases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATGAGCG ATAAACCGTT GACAAATTTA AATTTTTCTT CATTTGATCT GCATCCAGCG
TTGCTTACTG GGCTGACAAG AGCAGGATTT ACACTCTGTA CTCCGATCCA GGCGCTTACT
CTTCCGGTTG CACTGGCTGG CCGTGATATT GCCGGCCAAG CCCAAACGGG AACCGGGAAA
ACTTTGGCGT TTTTGGTGGT GGTAGTTAAC CGTTTACTTA GCAGTCCTGG GCTAGTCAAT
CGTAACCCAG AAGATCCGCG TGCGTTGATT TTGGCGCCAA CCCGTGAGCT TGCGATTCAA
ATCTATAACG ATGCAGTGAA ATTTGGTGGC AATCTTGGGT TACGTTTTGC GTTGATTTAT
GGGGGCGTTG ATTACGATAG GCAGCGCGAA ATGTTGCGCA AAGGTGCGGA TGTGGTCATT
GCGACGCCGG GGCGCTTGAT TGATTATCTT AAGCAGCACG AGGTGGTTTC GTTGCGCGTT
TGTGAGATTT GCGTTCTTGA TGAAGCAGAT CGGATGTTTG ACCTTGGGTT TATCAAGGAC
ATTCGCTTTA TATTGCGGCG TTTGCCCGAG CGTTGTAGCC GTCAGACTTT GCTGTTCTCA
GCCACTCTCA GTCACCGCGT GTTGGAGTTG GCATATGAGT ATATGAATGA GCCAGAGAAG
CTGGTGGCGG AGACTGAGAG TGTCACTACT ACGCGTGTCC GTCAACGTAT TTATTTCCCT
GCTGAGGAGG AGAAAATCCC ATTGCTCTTG GGTTTGCTCT CGCGTAACGA GGGGATGCGT
ACTATGGTGT TTGTCAATAC AAAGGTGTTC GTCGAAGGTG TTGCGCGCGC GCTTGATGAG
GCTGGTTACC GGGTCGGTGT GCTGTCTGGA GATGTGCCAC AAAGGAAGCG AGAGACTTTG
CTTAATCGTT TCCAGAAAGG GCAATTGGAA ATACTGGTTG CCACAGATGT GGCTGCACGT
GGATTGCACA TTGATGGCGT TAATTACGTA TACAACTACG ACCTACCGTT TGATGCAGAA
GATTACGTTC ACCGTATTGG CCGTACTGCG CGTTTGGGAG CTGATGGTGA TGCGATTAGT
TTTGCCTGTG AGCGTTACGC GATGAGTTTG CCGGACATTG AGGCATATAT CGAGCAGAAG
ATCCCGGTTG CAGCAGTGAC TGCTGAGTTG TTGGCTCCAT TGTCGCGTCC TGGACGTGCA
TCGAATGGTA ACGGTGATAC TGTTGGAGAT ATTTCCCCAC ATTCTCGTGA CGTGCTGGTT
GCTCAGGAAT GGCGTCGGGG TAAGCCCAGG GGTAGCCCTG GAGAGCGCGA TGGTCGCATC
CGTGTATGTA AAGGGACCCG GTCGGATGGG GGAGGTGGGC GCCGCCGCAC TAAATTTCGC
TTGGAGACCG AGCGTGATTC CAGTGTGGAT GGGGCAGTCA CTCCTGTATT TGGAGTGTCT
ACGGGGATAG TATCTGCTCC AGGTAAAGAG GTGGGGCGAA ACATCGGTCT CCGACGTCGT
AGTCGTTCAA TGGATTCTGG TGAAAGTGGC CATGTTGTCG CCACTGCCGA CCAAGTGGCT
GCTAAGTCAG GTAGTCAACC GTCGCTCTTA GGTCGAATAG GGCGCCGTAT CCGCTCGCTG
TTAAGTATGT TCTAA
|
|---|
| Protein sequence | MMSDKPLTNL NFSSFDLHPA LLTGLTRAGF TLCTPIQALT LPVALAGRDI AGQAQTGTGK
TLAFLVVVVN RLLSSPGLVN RNPEDPRALI LAPTRELAIQ IYNDAVKFGG NLGLRFALIY
GGVDYDRQRE MLRKGADVVI ATPGRLIDYL KQHEVVSLRV CEICVLDEAD RMFDLGFIKD
IRFILRRLPE RCSRQTLLFS ATLSHRVLEL AYEYMNEPEK LVAETESVTT TRVRQRIYFP
AEEEKIPLLL GLLSRNEGMR TMVFVNTKVF VEGVARALDE AGYRVGVLSG DVPQRKRETL
LNRFQKGQLE ILVATDVAAR GLHIDGVNYV YNYDLPFDAE DYVHRIGRTA RLGADGDAIS
FACERYAMSL PDIEAYIEQK IPVAAVTAEL LAPLSRPGRA SNGNGDTVGD ISPHSRDVLV
AQEWRRGKPR GSPGERDGRI RVCKGTRSDG GGGRRRTKFR LETERDSSVD GAVTPVFGVS
TGIVSAPGKE VGRNIGLRRR SRSMDSGESG HVVATADQVA AKSGSQPSLL GRIGRRIRSL
LSMF
|
|---|
| |