| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | XfasM23_2106 |
|---|
| Symbol | rpoB |
|---|
| ID | 6202143 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Xylella fastidiosa M23 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010577 |
|---|
| Strand | - |
|---|
| Start bp | 2375982 |
|---|
| End bp | 2380136 |
|---|
| Gene Length | 4155 bp |
|---|
| Protein Length | 1384 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 641703617 |
|---|
| Product | DNA-directed RNA polymerase subunit beta |
|---|
| Protein accession | YP_001830778 |
|---|
| Protein GI | 182682618 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit |
|---|
| TIGRFAM ID | [TIGR02013] DNA-directed RNA polymerase, beta subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.0644464 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACATCCT ATTCGTTCAC CGAAAAGAAG CGTATCCGCA AGGATTTCGG CAAGCATCGT
TCGATCCTCA AGGTGCCGTT TTTGTTAGCT ATCCAGGTGG ACTCTTATCG TGCATTCCTT
CAAGGAGATG TGGAGTCCAG CCAACGTAAA GACATTGGTT TACATGGGGC ACTGAAATCA
GTATTTCCTA TTGTCAGTTA CAGCGGTAAT GCTGCTTTGG AATATGTCGG TTACAAACTT
GGTGAGCCGA TGTTCGATGA ACGTGAATGC CGGCAGCGTG GTATGAGTTA TGGTGCGCCG
TTGCGCGTGA CCGTTCGTTT AGTCATTTAT GATCGTGAGT CATCGACAAA AGCAGTTAAG
TACATTAAGG AACAGGAAGT ATATCTTGGT GAAATCCCGT TGATGACTGA AAACGGTACC
TTCATTGTGA ATGGTACCGA GCGAGTCATT GTTTCGCAGT TGCATCGTTC CCCAGGTGTC
TTTTTTGACC ACGATCGTGG CAAGACACAC AGTTCGGGTA AATTGCTTTA TAGCGCTCGT
ATCATTCCTT GTCGAGGTTC ATGGTTGGAC TTCGAATTCG ACCCAAAAGA TGCGCTATTT
ACCCGTATTG ACCGTCGCCG TAAGTTGCCG GTATCCATTT TGTTGCGTGC ACTCGGTTAT
TCTAACGAGG AAATACTTGG CGAATTTTTT GAAATTAATA CGTTTCATAT TAATCCTGAT
GAAGGGGTGC AGCTTGAGTT GGTTCCCGAG CGGCTACGTG GTGAGATATT AAGTTTCAAT
CTGACTGACG GTGGCAGCGT GATTGTTGAA GCCGGTAAGC GCATCACTGC GCGTCATGTG
AAGCAGTTGG AGGCTTCGGG TATTTCCGCA TTAGCTGTGC CGGATGAGTA TCTAATTGGC
CGTATTTTAT CCCATGACGT GATTGATGCG ACGACTGGTG AATTGTTAGC CAGTGCCAAC
AGTGAGGTGA ATGAGGATCG CATAATTGCT TTTCGCAAGG CTGGTATCGA GTCGGTCGGA
ACCCTTTGGG TGAACGATTT GGATCGTGGT GCTTATCTAT CTAATACTTT GCGTATTGAT
CCGACTAGAA CTCAGCTTGA GGCGCAGGTT GAAATATATC GCATGATGCG TCCAGGAGAG
CCGCCAACTA AGGAGGCAGC TCAAAACTTA TTTCATAATT TATTTTTTAC TTTTGATCGT
TACGACTTAT CAATGGTTGG TCGCATGAAG TTTAATCGCC GTGTTGGCCG TAAAGAAGTC
GCTGGCGAGC CTGTTCTTTA CGATAAAAAG TATTTTTCAG ATCGTAATGA TGAAGAATCC
AGGCGCTTAG TTTCTAAGCT GGGCGAAACT TCCGATATCC TTGATGTGAT TAAAGGTTTG
TGTGAGATTC GTAATGGTCG TGGTGTTGTC GATGATATTG ATCATCTGGG TAACCGTCGG
GTGCGTTCTG TCGGTGAGAT GGCAGAAAAT GTCTTCCGTG TTGGGCTTGT CCGTGTCGAA
CGTGCTGTCA AAGAACGTTT GTCAATGGCC GAATCCGAGG GGCTTACGCC TCAAGAGTTG
ATCAATGCTA AACCGGTTGC TGCCGCGATT AAGGAATTCT TCGGTTCCTC CCAATTGTCC
CAGTTCATGG ATCAGAATAA TCCTTTGTCG GAAGTGACTC ATAAGCGTCG TCTTTCGGCA
TTGGGTCCAG GTGGATTAAC ACGTGAGCGA GCTGGTTTCG AAGTGCGTGA TGTTCATTTA
AGTCATTATG GCTGTTTATG TACGATCGAA ACCCCTGAAG GTCCCAATAT TGGCCTAATC
AATTCACTGG CCGTGTTTGC TCGTACCAAC CAATATGGCT TCCTTGAGAC ACCGTATCGC
AAGGTTGTGG AAGGTCGTGT TACCGATGAA GTTGAGTACT TGTCGGCGAT TGAGGAAAAT
CAGTATGTTA TTGCACAGGC GAACACGCTG ACTGATGATA ATGGGCAATT AACCGAGTCA
TTTGTGCCAT GTCGTTTTCA GGGGGAGTCG CTCTTGAAGC CCCCATCTTA TGTTCATTAC
ATGGATGTTT CGCCGATGCA GACAGTGTCA GTTGCTGCTG CTTTGGTGCC ATTCTTGGAG
CATGATGACG CGAATCGCGC ATTAATGGGT GCGAACATGC AGCGCCAAGC TGTGCCCACC
TTGCGTGCTC AGAAACCGTT GGTTGGTACT GGTATTGAGC GTACAGTGGC GCGTGACTCG
GGTGTGACTG TGAATGCGCG CCGTGGAGGT GTGATTGATC AGGTCGATGC TGGCCGTATC
GTGGTTAAAG TCAACGAAAG TGAGATTATT GGTGCCACCG ATGCTGGTGT TGATATATAT
GGATTGATCA AATATACACG CTCAAATCAG AATACATGTA TCAATCAGCG CCCCCTTGTG
AATGTTGGCG ACATAGTTGC TAGTGGTGAC GTACTGGCCG ATGGCCCATC GACTGACATT
GGCGAATTGG CTCTTGGGCA AAACATGCTG ATCGCTTTTA TGCCTTGGAA TGGCTACAAC
TTCGAAGATT CAATTTTGCT TTCTGAACGC GTTGTTGAAG AGGATCGCTA CACTACAATT
CACATTGAGG AGCTGACTTG TATTGCGCGC GATACCAAGT TGGGATCAGA GGAAATTTCA
GCTGACATCC CTAACGTCTC TGAGCAGGCA TTAAATCGTC TAGATGAGTC AGGTGTGGTG
TACATCGGTG CTGAGGTGCG CGCTGGCGAT ATTTTGGTTG GTAAAGTCAC GCCGAAGGGA
GAAAGTCAGT TAACTCCAGA AGAAAAGTTG CTGCGTGCCA TCTTTGGTGA AAAAGCTTCG
GATGTGAAGG ATAGTTCGCT TCGTGTACCT CCGGGCATGG ATGGTACTGT AATTGATGTC
CAGGTGTTCA CCCGTGATGG TATTGAGAAG GACAAGCGTG CGCACCAGAT CGAAGAGTAT
GAAATCAAGC GTGTCAAAAA GGATTTTGAT GATCAATTTC GTATTCTAGA AGGTGCTATT
TATGCTCGTT TGCGTTCTCA GATTGTAGGT AAGGTGGTTA ACTCCGGTGT TGATATTAAA
AAGGGTGAGG TCATCACTGA TCCTTATCTT GATGGTTTGA AGAAGAGTGA CTGGTTTGCA
TTGCGTATGA AGGATGAGGT TGCTGTTGAG GCAATCGATA GGGCGCAGAA ACAGATACAG
GCGTACCAGA AAGAGTTCGA TCAGCGTTTT TCTGACAAGC GTAGCAAAAT CACTCAGGGG
GACGACTTGG CTCCGGGTGT ATTGAAAATG GTCAAGGTGT TTTTGGCTGT AAAGCGTTGT
ATTCAGTGTG GCGATAAGAT GGCCGGACGT CATGGTAATA AAGGTGTGAT TTCCAACGTT
GTTCCCGTTG AAGACATGCC ATTTATGGAG GATGGGACAC CTGTCGATAT CGTGTTAAAT
CCGTTGGGCG TTCCCTCTCG TATGAATATT GGCCAAATCT TAGAGGTGCA TTTGGGGTGG
GCAGCTAAGG GTTTGGGGCA TCGAATTCAG CGTATGCTGG AGGCCAATGC TGCTATTGCG
GACTTAAGAA AATTTCTTAA TGAAATTTAT AATCATGATA AAAGCTTGGT TGGCGAGCGT
GTAGATCTGT CTCAGTTCAG TGATGACGAA TTGCTGAATA TGGCTAAGAA TCTGACTGAT
GGTGTGCCGA TGGCGAGCCC GGTTTTCGAT GGTGCCTCTG AACAAGAGAT CAAACGTATG
CTGGATCTCG CGGAATTGCC GGCCGGCGGT CAGACCCAAC TCTACGATGG CCATACTGGG
GAACCTTTCG ATCGTAAGAC TACGGTCGGT TACATGCACT ATTTAAAATT GAACCATTTG
GTTGATGACA AGATGCACGC TCGTTCAACT GGCCCTTATT CACTGGTTAC TCAGCAACCA
TTGGGTGGTA AGGCCCAGTT TGGAGGGCAG CGTTTTGGCG AAATGGAAGT TTGGGCCTTG
GAAGCTTATG GCGCAGCTTA CACTCTGCAG GAAATGTTGA CTGTAAAGTC TGATGATGTT
CAGGGGCGTA ATCAGATGTA CAAGAACATT GTTGATGGTG ATCATCAGAT GGTGGCAGGT
ATGCCTGAAT CTTTTAATGT TCTCGTGAAA GAAATCCGCT CCTTAGCAAT TAATATTGAG
TTGGAAGATA ACTAA
|
|---|
| Protein sequence | MTSYSFTEKK RIRKDFGKHR SILKVPFLLA IQVDSYRAFL QGDVESSQRK DIGLHGALKS
VFPIVSYSGN AALEYVGYKL GEPMFDEREC RQRGMSYGAP LRVTVRLVIY DRESSTKAVK
YIKEQEVYLG EIPLMTENGT FIVNGTERVI VSQLHRSPGV FFDHDRGKTH SSGKLLYSAR
IIPCRGSWLD FEFDPKDALF TRIDRRRKLP VSILLRALGY SNEEILGEFF EINTFHINPD
EGVQLELVPE RLRGEILSFN LTDGGSVIVE AGKRITARHV KQLEASGISA LAVPDEYLIG
RILSHDVIDA TTGELLASAN SEVNEDRIIA FRKAGIESVG TLWVNDLDRG AYLSNTLRID
PTRTQLEAQV EIYRMMRPGE PPTKEAAQNL FHNLFFTFDR YDLSMVGRMK FNRRVGRKEV
AGEPVLYDKK YFSDRNDEES RRLVSKLGET SDILDVIKGL CEIRNGRGVV DDIDHLGNRR
VRSVGEMAEN VFRVGLVRVE RAVKERLSMA ESEGLTPQEL INAKPVAAAI KEFFGSSQLS
QFMDQNNPLS EVTHKRRLSA LGPGGLTRER AGFEVRDVHL SHYGCLCTIE TPEGPNIGLI
NSLAVFARTN QYGFLETPYR KVVEGRVTDE VEYLSAIEEN QYVIAQANTL TDDNGQLTES
FVPCRFQGES LLKPPSYVHY MDVSPMQTVS VAAALVPFLE HDDANRALMG ANMQRQAVPT
LRAQKPLVGT GIERTVARDS GVTVNARRGG VIDQVDAGRI VVKVNESEII GATDAGVDIY
GLIKYTRSNQ NTCINQRPLV NVGDIVASGD VLADGPSTDI GELALGQNML IAFMPWNGYN
FEDSILLSER VVEEDRYTTI HIEELTCIAR DTKLGSEEIS ADIPNVSEQA LNRLDESGVV
YIGAEVRAGD ILVGKVTPKG ESQLTPEEKL LRAIFGEKAS DVKDSSLRVP PGMDGTVIDV
QVFTRDGIEK DKRAHQIEEY EIKRVKKDFD DQFRILEGAI YARLRSQIVG KVVNSGVDIK
KGEVITDPYL DGLKKSDWFA LRMKDEVAVE AIDRAQKQIQ AYQKEFDQRF SDKRSKITQG
DDLAPGVLKM VKVFLAVKRC IQCGDKMAGR HGNKGVISNV VPVEDMPFME DGTPVDIVLN
PLGVPSRMNI GQILEVHLGW AAKGLGHRIQ RMLEANAAIA DLRKFLNEIY NHDKSLVGER
VDLSQFSDDE LLNMAKNLTD GVPMASPVFD GASEQEIKRM LDLAELPAGG QTQLYDGHTG
EPFDRKTTVG YMHYLKLNHL VDDKMHARST GPYSLVTQQP LGGKAQFGGQ RFGEMEVWAL
EAYGAAYTLQ EMLTVKSDDV QGRNQMYKNI VDGDHQMVAG MPESFNVLVK EIRSLAINIE
LEDN
|
|---|
| |