| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | XfasM23_2105 |
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| Symbol | |
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| ID | 6203067 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Xylella fastidiosa M23 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010577 |
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| Strand | - |
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| Start bp | 2371660 |
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| End bp | 2375883 |
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| Gene Length | 4224 bp |
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| Protein Length | 1407 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 641703616 |
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| Product | DNA-directed RNA polymerase subunit beta' |
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| Protein accession | YP_001830777 |
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| Protein GI | 182682617 |
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| COG category | [K] Transcription |
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| COG ID | [COG0086] DNA-directed RNA polymerase, beta' subunit/160 kD subunit |
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| TIGRFAM ID | [TIGR02386] DNA-directed RNA polymerase, beta' subunit, predominant form |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.499059 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAGATC TACTCAATCT TTTTAATCAG CAGCGCCAGA CATTGGATTT CGATGCCATC
AAGATTGGCC TTGCCTCGCC TGCCTTGATT AGATCTTGGT CGTTCGGTGA AGTGAAGAAG
CCGGAAACAA TCAACTACCG CACTTTTAAG CCTGAGCGTG ATGGTTTGTT TTGTGCTGCT
ATCTTTGGTC CTATCAAGGA CTATGAATGT TTATGTGGCA AATATAAGCG CATGAAGCAT
CGAGGGGTGG TCTGTGAGAA ATGTGGTACC GAGGTGACTT TAGCAAAAGT ACGCCGTGAG
CGTATGGGTT GCATTGAGCT AGCTTCGCCT GTTGCTCATA TTTGGTTCTT AAAATCGCTA
CCTTCACGCA TTGGATTGAT GCTGGACATG ACTTTACGTG ATATCGAGCG TGTCTTGTAC
TTCGAAGCCT ATGTAGTGAC TGAGCCGGGT CTAACTCCTT TAGAACGGCG TCAGCTCCTA
ACCGAAGAAC AATATTTGCA AGCCCGTCAA GAACATGCTG ATGACTTCGA TGCTTCTATG
GGAGCCGAAG CTGTATACGA ACTCTTGCGA ATGATTGACT TGCAATCGGA GATGGCTCGT
TTGCGTGAGG AAATCGTTGT CACTGGTTCT GAGACTAAGC TGAAACGTTT GACTAAACGT
ATTAAGCTGA TTGAAGCGTT TATCGAATCT GGCAATCGTC CGGAATGGAT GATTTTGACC
GTGTTGCCTG TACTACCCCC AGACCTGCGT CCGCTGGTGC CGTTGGACGG TGGTCGCTTT
GCAACCTCTG ATCTTAATGA CCTGTACCGT CGAGTCATTA ATCGTAACAA TCGTCTGTGC
CGCTTATTGG AGTTAAGTGC TCCTGACATC ATCGTGCGCA ACGAGAAGCG CATGTTGCAG
GAATCAGTCG ACGCGTTGCT AGACAACGGT CGTCGTGGGC GTGCTATTAC TGGTACTAAT
AAGCGTCCCT TAAAATCGTT AGCGGACATG ATTAAGGGTA AACAGGGTCG TTTTCGCCAA
AATTTGCTTG GAAAGCGTGT CGATTACTCT GCTCGTTCAG TGATTATCGT AGGCCCTAAT
CTTCGGTTAC ACCAATGTGG ATTACCGAAA AAAATGGCGC TTGAGCTATT CAAACCTTTT
GTGTTTGCTA AGCTGCAGCG TCGCGGCTTG GCTACTACGA TTAAGGGAGC TAAAAAACTA
GTTGAGCGTG AAGAAGCCGA GGTCTGGGAT ATTCTTGAAG AGGTTATTTC TGAGCATCCT
GTGGTATTGA ATCGTGCGCC AACTTTACAT CGCCAGGGTA TTCAAGCCTT TGAGCCAGTT
TTAATTGAAG GTAAAGCGAT TCAGTTACAT CCGTTAGTTT GTACTGCATT CAATGCAGAT
TTCGATGGCG ATCAGATGGC CGTGCATGTG CCTCTTTCGC TCGAAGCTCA GCTTGAAGCG
CGTGCGTTGA TGATGTCTAC TAACAACATA CTGTCTCCAG CGAATGGTGA GCCGATCATC
GTACCATCAC AGGATGTTGT ACTTGGCTTG TACTACATGA GCCGTGCACT TGAAAATAAG
AAGGGCGAAG GGATGGTGTT CGCCAATACC AGCGAGCTGA AACGTGCTTA CGACAATAGC
GTTGTTGAAT TGCATGCTAA GGTGAAGGTT CGTATTACAG AGATAGAGAC TGATGATCAA
GGGCTGCGTA ACAAGGCTTC TTCGATTGTA GATACTACGG TAGGTCGTGC ATTATTGAGT
GAGATTCTTC CAGAAGGTTT GCCGTTTGTT CTTGTCAATA CCGAAATGAC TAAAAAGAAC
ATTTCGAGGT TGATTAATTC AAGTTATCGC ATGCTTGGCT TGAAGGAAAC TGTTGTATTT
GCAGATAAAT TGATGTACAC GGGTTATGCC TATGCGACAC GTGCCGGTGT GTCAATCTGT
ATTGATGACA TGCTGATTCC TATCGAAAAG AAAGAAATAT TGGGTGAAGC TGAGCAAGAA
GTGCTCGAGA TTCAGGAGCA GTATCAATCC GGATTGGTTA CCGCTGGCGA GCGTTATAAC
AAAGTGGTTG ATATTTGGTC CCGTACTAAT GAACGGATTG CCAAGGCAAT GATGGATACC
ATCGGCACTG AGAGAGTGGT TAACGCCGAT GGTGAAATCG TTGATCAGAA GTCGATGAAT
TCGCTCTATA TCATGGCTGA TTCTGGCGCG CGCGGTAGCC CGCAGCAGAT TCGCCAATTA
GCTGCTATGC GTGGTCTAAT GGTACGTCCT GATGGCTCGA TCATTGAGAC ACCCATCAAA
GCTAACTTTC GTGAAGGTTT GAGTGTCCAG GAATATTTCA ACTCTACGCA TGGTGCTCGT
AAAGGTTTGG CTGATACTGC ATTGAAGACA GCGAACTCTG GTTACCTGAC TCGCCGTTTG
GTTGATGTCA CTCAAGATTT ATGTGTTGTA CAGCTTGATT GCGGCACTGC TGGTGGATTA
ACTATGACCC CGATCGTTGA AGGTGGAGAT GTTGTTGAGC CACTTAAGGA TCGCGTGTTA
GGACGTGTTG TTGCTGAGGA TGTATTGCTG CCTGGTAATG ATGATGAGCC CATTGTAACT
CGTAGCACCT TGCTTGATGA GCAATGGGTA GCTAAGTTGG AAGAGGCCGG TGTGCAGTCA
GTGAAGGTTC GTTCTCCTAT CACATGTGAG TCTCCGTTTG GCGTATGCGC CCTATGCTAT
GGTAGGGATC TCGCTCGTGG TCATTTGGTT AATATGGGTG AAGCAGTAGG TGTCATTGCT
GCTCAATCAA TCGGTGAACC AGGTACGCAG TTGACGATGC GTACCTTCCA TATTGGTGGT
ACCGCGTTGA GTGCAGCAGC GATAGATAAC ATTACTGTAA AAACTAGCGG TTCGGTAAAA
TTTACTAATC TAAAGTATGT TGAGCATGCC AATGGTACTT TGGTTGCGGT ATCTCGTTCC
GGAGAGATTT CGGTTCTAGA TACTCACGGC CGTGAGCGTG AACGCTACAA GTTACCTTAC
GGTGCAACTA TAAATGTCAA GGATATGGCT GAAGTCAAAT CAGGGCAAAT CTTGGCAAAT
TGGGATCCCC ACAATCACCC AATTGTTTCT GAAGTTGCAG GTTTTGTCCG TTTTATCGAT
TTTGTTGATG GTGTCACTGT CATTGAGAAA ACTGATGATC TGACTGGTTT ATCTTCCCGT
GAGATTGCTG ATCTGAAGCG CCGTGGTTCC CAAGGTAAGG ATCTTCGTCC TTTGGTGCGT
ATCGTTGATA AAAAAGGTAA CGATCTGACT ATTCCCGGTA CTGATCTTTC AGCTCAGTAT
TTGTTGCCTC CGCGTTCGAT TGTTAATCTT CAGGATGGTG CTCCAGTTGG CATCGGTGAT
GTGGTGGCTA AGATTCCACA GGAGGCCTCC AAAACTCGCG ATATCACTGG CGGTTTGCCT
CGGGTGGCGG ATCTGTTCGA AGCGCGTAGG CCGAAAGATC CTGCTATTTT GGCTGAGCGT
TCAGGGGTGA TAAGTTTTGG TAAAGACACC AAAGGTAAGC AGCGATTGAT TATTAAAGAT
GCCGATGGAA GCGAGCACGA AGAGTTGATT CCTAAGTACC GTCAAATTAT TGTGTTCGAG
GGAGAGCATG TCACCAAGGG GGAGACCATT GTGGACGGTG AGCCGAGTCC ACAGGATATT
TTGCGTTTAC TCGGTATCGA GCCGTTAGCT GCTTACTTGG TTAAAGAAAT ACAGGATGTG
TATCGTTTGC AGGGTGTGAA GATCAATGAT AAGCATATTG AAGTCATTAC ACGGCAAATG
TTGCGCAAAG TTGAGATTGT TGATCAGGGA AACAGTAAGT TCCTCAATGG TGAGCAAGTT
GAACGTCAGC GTGTTATCGA TGAAAACGCG AAGTTAATTG CGCGCAATGA ATTACCAGCA
AAGTACAATC CAGTGTTACT AGGTATTACT AAGGCTTCTT TGGCAACGGA ATCGTTCATT
TCCGCAGCTT CTTTCCAAGA AACGACCCGT GTCTTAACTG AGGCTGCGGT ACGAGGGACC
AGGGATAATT TGCGTGGTTT GAAAGAAAAT GTCATCGTTG GTCGCCTTAT TCCGGCTGGT
ACTGGCCAGA CGTATCATAG CCAGCGTCGC TATAGTTCTG TTGGTCTTAC TGAGTCTGAA
ATGGAAACCT TGGTTGGTCG CAGTACCTCA TCTGGTACAG AAGTTACTTC GCCTTCCAAG
GATGCGATTC CTCTTGGGGG GTAA
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| Protein sequence | MKDLLNLFNQ QRQTLDFDAI KIGLASPALI RSWSFGEVKK PETINYRTFK PERDGLFCAA
IFGPIKDYEC LCGKYKRMKH RGVVCEKCGT EVTLAKVRRE RMGCIELASP VAHIWFLKSL
PSRIGLMLDM TLRDIERVLY FEAYVVTEPG LTPLERRQLL TEEQYLQARQ EHADDFDASM
GAEAVYELLR MIDLQSEMAR LREEIVVTGS ETKLKRLTKR IKLIEAFIES GNRPEWMILT
VLPVLPPDLR PLVPLDGGRF ATSDLNDLYR RVINRNNRLC RLLELSAPDI IVRNEKRMLQ
ESVDALLDNG RRGRAITGTN KRPLKSLADM IKGKQGRFRQ NLLGKRVDYS ARSVIIVGPN
LRLHQCGLPK KMALELFKPF VFAKLQRRGL ATTIKGAKKL VEREEAEVWD ILEEVISEHP
VVLNRAPTLH RQGIQAFEPV LIEGKAIQLH PLVCTAFNAD FDGDQMAVHV PLSLEAQLEA
RALMMSTNNI LSPANGEPII VPSQDVVLGL YYMSRALENK KGEGMVFANT SELKRAYDNS
VVELHAKVKV RITEIETDDQ GLRNKASSIV DTTVGRALLS EILPEGLPFV LVNTEMTKKN
ISRLINSSYR MLGLKETVVF ADKLMYTGYA YATRAGVSIC IDDMLIPIEK KEILGEAEQE
VLEIQEQYQS GLVTAGERYN KVVDIWSRTN ERIAKAMMDT IGTERVVNAD GEIVDQKSMN
SLYIMADSGA RGSPQQIRQL AAMRGLMVRP DGSIIETPIK ANFREGLSVQ EYFNSTHGAR
KGLADTALKT ANSGYLTRRL VDVTQDLCVV QLDCGTAGGL TMTPIVEGGD VVEPLKDRVL
GRVVAEDVLL PGNDDEPIVT RSTLLDEQWV AKLEEAGVQS VKVRSPITCE SPFGVCALCY
GRDLARGHLV NMGEAVGVIA AQSIGEPGTQ LTMRTFHIGG TALSAAAIDN ITVKTSGSVK
FTNLKYVEHA NGTLVAVSRS GEISVLDTHG RERERYKLPY GATINVKDMA EVKSGQILAN
WDPHNHPIVS EVAGFVRFID FVDGVTVIEK TDDLTGLSSR EIADLKRRGS QGKDLRPLVR
IVDKKGNDLT IPGTDLSAQY LLPPRSIVNL QDGAPVGIGD VVAKIPQEAS KTRDITGGLP
RVADLFEARR PKDPAILAER SGVISFGKDT KGKQRLIIKD ADGSEHEELI PKYRQIIVFE
GEHVTKGETI VDGEPSPQDI LRLLGIEPLA AYLVKEIQDV YRLQGVKIND KHIEVITRQM
LRKVEIVDQG NSKFLNGEQV ERQRVIDENA KLIARNELPA KYNPVLLGIT KASLATESFI
SAASFQETTR VLTEAAVRGT RDNLRGLKEN VIVGRLIPAG TGQTYHSQRR YSSVGLTESE
METLVGRSTS SGTEVTSPSK DAIPLGG
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