| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | XfasM23_2047 |
|---|
| Symbol | ligA |
|---|
| ID | 6203393 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Xylella fastidiosa M23 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010577 |
|---|
| Strand | - |
|---|
| Start bp | 2295468 |
|---|
| End bp | 2297963 |
|---|
| Gene Length | 2496 bp |
|---|
| Protein Length | 831 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 641703557 |
|---|
| Product | NAD-dependent DNA ligase LigA |
|---|
| Protein accession | YP_001830719 |
|---|
| Protein GI | 182682559 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0272] NAD-dependent DNA ligase (contains BRCT domain type II) |
|---|
| TIGRFAM ID | [TIGR00575] DNA ligase, NAD-dependent |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATCCCCC TGGATCCTGC CCAGCGTGCC GCTGAACTGC GTCGTCGTCT TCAAGAGGCC
AACTACCACT ACCACGTCCT CGACCAACCA CGTATTCCGG ATGCTGACTA CGACCGCATG
TTGCGTGAAC TGGACGCCCT CGAAGCGACC TATCCAGACC TAGCGACGCC TGATTCACCG
ACTCAGCGTG TTGGACACAC CATTGCCACC GCATTTTCCG AAGTGCGCCA TACCGTCCCG
ATGCTTTCCC TGAACAATGC CTTCAGTGAT CCCGAAGTCC TTGAATTCGT GCGCCGTATT
ACCGCGCGTC TGGGAGAAAC AGCCCCTGGT TTTTCCGCAG AACCCAAACT GGATGGCTTG
GCGATCAGCC TCCGCTATCA GAACGGCATC TTTATCCAAG GAGCGACTCG CGGCGATGGC
GTCACCGGCG AAGATGTCAC CGCCAACCTG CGTACCCTGC CTACCATCCC GCAACGCTTG
CAAAGCGACA CATGGCCAAC CGTGTTGGAA GTGCGCGGCG AAGTGTATAT GCCACGTCCT
GACTTTGAAG CCTACAACAC CCAGGCCCGG CTTCGCGGAT GGAAAGTACT GGCCAATCCC
CGCAATGGCG CCGCCGGCTC CTTGCGGCAA CTGGACCCAC ACATCACCGC ACAGCGCCCC
CTGAGCTTCT ATGCCTACGG TATCGGCGAA GTGACCGATG ACGTAGCGTT CCACCGCCAC
TCCGAAATCC TGGCCTCCCT ACGTGCCTGG GGATTCCCCG TCTCCCCCCT CGTGGAGCTG
GTGTATGGCA GTGAAGGACT ACTGAATTAC TACCGCCGGA TGGAAACCAT TCGCGATACC
TTACCGTTTG ATATTGATGG CATCGTTTAT AAACTCGACG ACCTGTCTGG CCAGCATGAA
ATGGGGTTTG TCGCCCGTGC CCCCCGTTGG GCCATTGCCC ATAAATTTCC GGCCCAAGAA
CAAACCACCA CTGTTGAAGC CATTGAAATC CAGATTGGCC GCACCGGTGC GGCCACCCCA
GTCGCACGCC TGACCCCCGT ACAAGTCGCT GGAGTCACCG TTACCAGCGT CACCTTGCAT
AACGCTGACC AGATCGCCCG CTTGGATGTA CGCATCGGTG ATACCGTCAT CGTGCGCCGT
GCTGGTGACG TGATTCCTGA AGTCGTCGCA GTCATCACCG ACAGCCGCCC CCCTGGAGCC
ACCGCATGGA GCATGCCGAT GGCGTGCCCC GTCTGTGGTT CCGAGATTGT TCGTGAAACA
GGCGCCGCTG TATGGCGTTG CTCCGGTGAA CTCGCCTGTC CCGCCCAACG CAAAGAGGCC
ATCCGCCATT TCGTCTCCCG CCGCGCTATG GATGTCGAAG GGCTGGGCGT CAAGTGCATT
GAATTACTGG TGGATGCCGC CGTTGTCCAC GGCGTCGCTG ACCTGTATCA CCTGAGCCTG
GATCAACTGC TGCGGCTCCG CCTCGTCACC AATGCCCAAA CCCCCACCAT GCTCCTGCGC
GAAGCGCGCG ACCATGTGAC CGGCATGCGT TACCAACAAT TAGAAGAGAT ACTGCGCACC
GTGGGTGTGG ACCTGTCTGG TGAAGGTGAC GTGCCCAAGC ATTGGCAGAT TGACGTATTG
CGTGCCCAAT GGCCGGACTT TGATTGGAAC CACAAAAAGA TTGCCACCAA GTGGGCGCAG
AACCTGATTG CTGCCATTGA CCGCTCACGG CAGACTACCT TGGAGCGTTT CCTCTTTGCC
CTTGGCATGA CCCATGTCGG CGAAACCACC GCCAAAGCAC TGGCGCACTC CTTCGGGGAC
TTAGCAATCA TTCGGCAACT CCCTTGGCCC TTATTCAAAT GCGTCCCGGA TATTGGAGGC
GAAGTGGCAC GTGCCATCGG CCACTTTATG GATCAGCCCG CCAACCAACA GGCCATTGAT
GACCTAGTGG AGCGTGGCGT GCGTATCACC GATGCCCATC CCCCCACATC TACATTGCGC
GATCAACTCA CCCTGGCCAG CCTCTTGGAA CACTTGGAGA TTCCAAAAAT CACCCCACTG
CGTGCTGTCC AGTTAGCCAC CCTCGCTCCC ACATTGCCCT TATTGGCTGA AGCCGACCTT
GATGCACTCC TTCAGGCGGG CGTGCCCCAG CCTGCTGCAC AATCATTGAC CGAATGGTTC
CAATCTCCTG ATAACATCTC CTTAGCCCGC CGCCTCCAGC ACTGCTGTGA CGTACTGTTG
GCACAACTGC TATCTCCCGA TCGTGCCCAC ACTGCCCCAC TCAACGGCCA GAGCGTCGTA
CTGACAGGCA AATTAGCGTC ACTGACCCGT GAAGCCGCCG CCACTCGACT AGAAAGCTTG
GGAGCCAAAA TTGTCGGCAG TGTGTCCAAA AAAACCAGCT TCCTTGTTGC TGGAGAAGAT
CCAGGCTCCA AACTCGACAA AGCCCACGCC TTGCATGTCG ATATTTGGGA TGAAGCCCGT
CTACTCGCCT TTCTGGAACA ATACAGTGCC CAATAG
|
|---|
| Protein sequence | MIPLDPAQRA AELRRRLQEA NYHYHVLDQP RIPDADYDRM LRELDALEAT YPDLATPDSP
TQRVGHTIAT AFSEVRHTVP MLSLNNAFSD PEVLEFVRRI TARLGETAPG FSAEPKLDGL
AISLRYQNGI FIQGATRGDG VTGEDVTANL RTLPTIPQRL QSDTWPTVLE VRGEVYMPRP
DFEAYNTQAR LRGWKVLANP RNGAAGSLRQ LDPHITAQRP LSFYAYGIGE VTDDVAFHRH
SEILASLRAW GFPVSPLVEL VYGSEGLLNY YRRMETIRDT LPFDIDGIVY KLDDLSGQHE
MGFVARAPRW AIAHKFPAQE QTTTVEAIEI QIGRTGAATP VARLTPVQVA GVTVTSVTLH
NADQIARLDV RIGDTVIVRR AGDVIPEVVA VITDSRPPGA TAWSMPMACP VCGSEIVRET
GAAVWRCSGE LACPAQRKEA IRHFVSRRAM DVEGLGVKCI ELLVDAAVVH GVADLYHLSL
DQLLRLRLVT NAQTPTMLLR EARDHVTGMR YQQLEEILRT VGVDLSGEGD VPKHWQIDVL
RAQWPDFDWN HKKIATKWAQ NLIAAIDRSR QTTLERFLFA LGMTHVGETT AKALAHSFGD
LAIIRQLPWP LFKCVPDIGG EVARAIGHFM DQPANQQAID DLVERGVRIT DAHPPTSTLR
DQLTLASLLE HLEIPKITPL RAVQLATLAP TLPLLAEADL DALLQAGVPQ PAAQSLTEWF
QSPDNISLAR RLQHCCDVLL AQLLSPDRAH TAPLNGQSVV LTGKLASLTR EAAATRLESL
GAKIVGSVSK KTSFLVAGED PGSKLDKAHA LHVDIWDEAR LLAFLEQYSA Q
|
|---|
| |