| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | XfasM23_1987 |
|---|
| Symbol | |
|---|
| ID | 6203340 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Xylella fastidiosa M23 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010577 |
|---|
| Strand | - |
|---|
| Start bp | 2226592 |
|---|
| End bp | 2228958 |
|---|
| Gene Length | 2367 bp |
|---|
| Protein Length | 788 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 641703497 |
|---|
| Product | membrane protein |
|---|
| Protein accession | YP_001830660 |
|---|
| Protein GI | 182682500 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG4258] Predicted exporter |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGGGTGATT GGATCTCTCG GTGTCGTATC GGTATTGCTG TGTTGTGGTT GTTGTTGTTA
GTCGGTCTGG GCTGGTGGCT TGCGGGTCGG CTGCAACTCA CGGGTGATCT GCGTCAGTTT
ATGCCTGAGG CACAGACTCC CGCACAAAAG TTGTTACTTG AGGAGCTGGG TGAGGGGCCG
GGTTCACGGT TGTTGTTGAT GTCGTTACGT GGGAGTGATC CAGCCATTTT GGCGCGGCAA
TCGCAGGCAT TACGGGAAGT GTTGGCAGGG CAGCCTCAGG TGTTTGAGTT GGTTGCTAAT
GGTGCGCATG TTGGGCTGGA GGCAATTCCG CCCCGATTAT TGCCATACCG CTATCTGTTT
AGTGACAGTT TTGATGCTGC GCCGCTGGAT GTTGGGTATC TCAAGCAGGC GTTGCAGATG
CGGGTACAGG ATTTGGGGTC TCCAGCCGCG CGTGTGGTTG AGCCGCTGTT GCCTCGGGAT
CCAACGTTGG AAGTGTTGCA TGTGGCTGAG CGTTTGCAGC CGTTAGCGGC ACCTGCAATG
CGTGATGGGG TTTGGTTTGA TCGTGCTGGA CGGCGTGCGT TATTGCTGGC GCAGACGCAT
GCTGCTGGTT TTGATCCGAC GGGCCAGCAG CGCGCTTACG ATGCGGTGCA GGCGGCGTTT
ACTCGGGTGT CGGTGAATAC GGCAACGCAG TTGGAACTCA CGGGACCTGG TGCGTTTGCG
GTGGAGATTG CTGCAAAGAC TCAAGGGGAG GCGCAGTGGA TCGGGATGTT GGATACGGTA
GGACTGATTG TGCTGTTGCT GTTGGCGTAT CGCAGTTGGA AGGTGCCGTT GTTGGGGGTG
TTACCTCTTG CCAGTGCTGG TCTGGCTGGT TTGGTTGCGG TGGCATTGCT GTTTGATCGT
GTGCATGGCA TCACGGTGGC GTTTGGTTTT ACCTTGATTG GTGTGGTGCA GGATTATCCG
ATTCACTTAT TTAGCCATCA ACGGCCGGGG CTGGACCCGC GGGAAAATGC GCGCCATTTG
TGGCCGGCTT TGGCGACGGG TGTTGTTTCT ACCTGTATTG CTTACGTTAC GTTTCTATTT
TCAGGGGTGG ATGGGCTACG TCAGCTTGCA ACTTTCACGA TTGCAGGGTT GTTGGTCGCG
GCAGTGACCA CGCGTTGGTT GTTGCCGGGG TTGATTGATC CTGCGCCGCG TGATCCTGCC
GATTCGGTCG TGCTCGCGCG GTTATGGCAG TGGACCGCGG GGGTGCGGTG TCCGCATTGG
TCGCTAGCAT TATTGAGTGT GGCCGCAGTC GCTGCGGTGC TGCTGGTGCC TGGTCCGTTC
TGGGAGAATG ATCTGTCTAA GTTGACTCCG GTACCGGTTG CTGCGTTGTT GCGTGATATG
CGCTTGCGTC AGGAGTTGGG GGCGCCGGAT GTGCGCTATG TGCTGGCACT GCATGCGGTT
TCGGCCGAGC AGGCGTTGCA AGCTGCTGAG GCGTTGCGCC CACGTCTGGA TGGTGCGGTT
GCCCAGGGTA TTGTTGCCGG TTACGACATG GCGGCGCGTT ATTTGCCTAG CATCCAGACG
CAGCGTCGGC GTCAACAGGC GTTACCCCCG CCGGAGCAAG TGCGCCGTTT GATCGCAGAG
GCTGTGATCG CTTCGGGGTT TCGTGCTGAT GTATTTGAGC CATTTCAGGC GGATGTGGAG
ATGGCACGGC AGGCACCGCC AATGACGATG CAGATGTTGG GAGGGACTGC GTTGGCGATG
CCGGTCAGTG GTTTGTTGTT GGTGGGTACT GACGGTGTCA CCGCGCTGGT GTCGCTGATT
GGTTTGCATG ATCCGCAGGC GCTCGCTGTC GTGGTAGGTG GTAGTGGTGC ACAGTTGATG
GATTTGAAGG AGGCGTCTGA GTCACTGGTT GTGGCTTACC GTGGTCGTGT GCTGGGGGCG
TTGGGTGTGG CTGGGTTTCT GTTGGTTGGC ACGGTGGCTT TGGCATTGCG TCAGTGGCGA
CGGATGGTGC GTGTGCTCTT GCCTATGGCG ATGACAACGT TATGGATTGT GGCATTGCAA
CGCATCTGTG GGGTGGAGTT GAATTTGTTT CACCTGATTG CGTTGATTCT TGCGGCTGGG
TTGGGCCTGG ACTATGCGTT GTTCTTTGAA CACGCCGGTG ATCATCGCGC CGAGCAATTG
CGCACGTTGC ATGCGTTGTT GGTGTGCAGT GTGATGACGT TGGTGGTGTT CGCTTTGTTG
GCTGTCTCAA GTATTCCGGT GCTGAGTGCG ATTGGGAGTA CGGTGGCTCT GGGTGTGCTG
CTTAACTTTG TTCTTGCGTT GTTGATCTCG CGTGTTCCGG TGTTGGAGAG GATTGCTGGG
AGTGATGCTC TTGTCGCAGG GGGGTGA
|
|---|
| Protein sequence | MGDWISRCRI GIAVLWLLLL VGLGWWLAGR LQLTGDLRQF MPEAQTPAQK LLLEELGEGP
GSRLLLMSLR GSDPAILARQ SQALREVLAG QPQVFELVAN GAHVGLEAIP PRLLPYRYLF
SDSFDAAPLD VGYLKQALQM RVQDLGSPAA RVVEPLLPRD PTLEVLHVAE RLQPLAAPAM
RDGVWFDRAG RRALLLAQTH AAGFDPTGQQ RAYDAVQAAF TRVSVNTATQ LELTGPGAFA
VEIAAKTQGE AQWIGMLDTV GLIVLLLLAY RSWKVPLLGV LPLASAGLAG LVAVALLFDR
VHGITVAFGF TLIGVVQDYP IHLFSHQRPG LDPRENARHL WPALATGVVS TCIAYVTFLF
SGVDGLRQLA TFTIAGLLVA AVTTRWLLPG LIDPAPRDPA DSVVLARLWQ WTAGVRCPHW
SLALLSVAAV AAVLLVPGPF WENDLSKLTP VPVAALLRDM RLRQELGAPD VRYVLALHAV
SAEQALQAAE ALRPRLDGAV AQGIVAGYDM AARYLPSIQT QRRRQQALPP PEQVRRLIAE
AVIASGFRAD VFEPFQADVE MARQAPPMTM QMLGGTALAM PVSGLLLVGT DGVTALVSLI
GLHDPQALAV VVGGSGAQLM DLKEASESLV VAYRGRVLGA LGVAGFLLVG TVALALRQWR
RMVRVLLPMA MTTLWIVALQ RICGVELNLF HLIALILAAG LGLDYALFFE HAGDHRAEQL
RTLHALLVCS VMTLVVFALL AVSSIPVLSA IGSTVALGVL LNFVLALLIS RVPVLERIAG
SDALVAGG
|
|---|
| |