| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | XfasM23_1932 |
|---|
| Symbol | |
|---|
| ID | 6201905 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Xylella fastidiosa M23 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010577 |
|---|
| Strand | + |
|---|
| Start bp | 2157732 |
|---|
| End bp | 2160104 |
|---|
| Gene Length | 2373 bp |
|---|
| Protein Length | 790 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 641703441 |
|---|
| Product | alpha-1,2-mannosidase |
|---|
| Protein accession | YP_001830605 |
|---|
| Protein GI | 182682445 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG3537] Putative alpha-1,2-mannosidase |
|---|
| TIGRFAM ID | [TIGR01180] alpha-1,2-mannosidase, putative |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCAACAC GACGCACTTT TTTGCGGGGT GCGATCAGCC TGACGCTGAT TGGCAGCACT
GGCCAGCTAC GTGCTCTGGC ACATCCACGC GCCAATACCT GGGCACTGCC CATTGACACA
CAGGCACAGG CAGATCTAAC GCGTTACGTG GATGTGTTTA TCGGCAGCAG CGGTCATGGG
CACACTTTCC CAGGGGCTAC GCTGCCTTTT GGCATGGTGC AACTCAGCCC GGACACCGAT
AACGCGGTCT GGGATGCTTG CTCCGGCTAT CACGCCTCCA ACGGCTCGAT CATGGGGTTC
TCGCACACTC ACCTCTCCGG CACGGGCATT GGCGACATGT TGGACATTTT GCTCATGCCT
GGGACTGGGG ACGTGAAGCT GGCACCTGGG CCGCTCAATG CTCCTGAGAC CGGCTACCGG
CAACGCTACG ATCACGCCGA GGAAGTGGCC TCGCCTGGTT ACTACCAGGT GCGCCTGAAG
GACACGGACA TTGTGGCCGA GCTGACCGCC ACCGCACGGA CTGGCCTGCA TCGTTACCAT
TTCCCTCAAC ATCAAGCCGG TCACCTGCTG TTGGACTTGA GCCACGCGAT GCAGGACAAC
CCAAGCACCC CACCACGGTT GCGCGATGTC GAGTTATCGA TCGTCGATAC ACGCACGCTA
CTGGGCGGCC GCCGTGTGTA TCAGTGGGCC AAGGGCCGCT ATCTCTTCTT CGCTATGCGG
TTGTCACGCC CGTTTGCACG TGCGCAGTTG TATAGCAACG ATGCGCCGCT GACTGCGGAC
ACGCGCCAGG TTCAGGGCGT GTGTCTGAAA GCGGCGTTGC ACTTCCCCGA TGCGGGCGAG
GCGCCGTTGC TGGTCAAAGT CGGCCTGTCT GCGGTCAGCG CCGCAAATGC GCTTGCCAAT
CTCGACGCAG AATTGCCGGA TTTCGATTTT GCCCGTGTAC ATGCCGAGGC CGTGGCGGCC
TGGGAGAATG CTCTAGGGCG CGCGCGGATC GCAACCGACA ATCCGGCGCA ACGTCGCATT
TTTTACACCA GTCTGTACCA CAGTCTGCTG GCGCCCACGT TGTTCAGTGA TGTGGATGGG
CGCTACCGCG GTATGGATCT CCAGGTGCAT ACGCTGCCAA CTGGCTACCA CAATTACAGT
ACCTACTCTT TATGGGACAC CTACCGCGCG CTGCATCCGC TGCTGACGCT GGTGCAGTCG
GATCGGGTCC CGGATCTGTT GCAATGTCTG GTCCGTGGCG CGGCTGAGTG TCCGGACGGT
GTCGGGATCT GGCCATTACA GGGCGTGGAG ACCGGCTGCA TGATCGGCTA TCACTCCGCG
GTAGCACTCG CCGAGGGCTA TACAAAAGGA TTCACTGGCA TCGACTATGC GGCGGCTTGG
CCGCACTACC GCAAGCGCGC CATGCAGGAT CACGCTCACG GTCTGCGGTA CTACCGCAGG
CTCGGCTATA TCCCCAGTGA CAAGGTGGAT GAATCCGTCA GCCGGACGCT GGAGTATGCC
TATGACGATT GGGCATGTGC GCATTTGGCC ACCGCCGCAG GGGCGCACAG TGAGGCACGG
GTGCTACGCG CACGCTCCCG CCATTATCGC CATGTGTTCA ACCGCGACAG TGGCTTTATG
CAACCGCGTC TGGAAAATGG TGCCTGGGCA ACGCCGTTTG ATCCACGCGC GTTGGGGCAC
TTGAAGCAGT GGCACGATTT CACGGAGTGC AATGCTTGGC AGGCAACGTT CCTCAATCAG
CACGATGTGT ACGGTTATAT GGCTCTGTTC GGCGGCGCTG ATCACTTTGC CGCCAAACTC
GACGCTCTGT TTTCTGCACT CTCGGAATTG CCGCCAGGAG CACCACCGGA TATTGATGGG
ATGGTGGGTC AGTACGCCCA CGGTAACGAG CCAAGCCACC ATATCGCCTA TCTGTACGTG
TATGCGGGGC AAGCGTACAA AACGCAAGCG ATGGTGCGCC GCCTACTCCG GGAGCAATAC
CATGATGGGC GCGATGGTCT GTCCGGGAAT GAGGATTGCG GGCAGATGAG TGCTTGGTTT
GTGCTCAGTG CGCTGGGGAT GTACGCAGTG GATCCGGTCA GCGGTATCTA TGTGATCGGC
AGCCCGTTGT TCCCATACGC GGAGTTGGAC GTGGGCCGAG GCCGTAAGCT GCGCATCTTG
GCGCGTCACA CCAGTGCGTC CAATGTCTAT GTGCAAGCAC TGCGCTGGAA CGGCAGTCCG
ATGACGCGTG CTTGGCTGCG CCACACTGAA TTGGCAGGAG GGGGGACGCT GGAATTTGAG
ATGGGTGCGC AACCGAATCT CGATTTCGGC ACCCATCCGC AGGATCTGCC TCCATCTTTC
ATGGCATTGC AGCCAGTTCC GAAACACGCA TGA
|
|---|
| Protein sequence | MATRRTFLRG AISLTLIGST GQLRALAHPR ANTWALPIDT QAQADLTRYV DVFIGSSGHG
HTFPGATLPF GMVQLSPDTD NAVWDACSGY HASNGSIMGF SHTHLSGTGI GDMLDILLMP
GTGDVKLAPG PLNAPETGYR QRYDHAEEVA SPGYYQVRLK DTDIVAELTA TARTGLHRYH
FPQHQAGHLL LDLSHAMQDN PSTPPRLRDV ELSIVDTRTL LGGRRVYQWA KGRYLFFAMR
LSRPFARAQL YSNDAPLTAD TRQVQGVCLK AALHFPDAGE APLLVKVGLS AVSAANALAN
LDAELPDFDF ARVHAEAVAA WENALGRARI ATDNPAQRRI FYTSLYHSLL APTLFSDVDG
RYRGMDLQVH TLPTGYHNYS TYSLWDTYRA LHPLLTLVQS DRVPDLLQCL VRGAAECPDG
VGIWPLQGVE TGCMIGYHSA VALAEGYTKG FTGIDYAAAW PHYRKRAMQD HAHGLRYYRR
LGYIPSDKVD ESVSRTLEYA YDDWACAHLA TAAGAHSEAR VLRARSRHYR HVFNRDSGFM
QPRLENGAWA TPFDPRALGH LKQWHDFTEC NAWQATFLNQ HDVYGYMALF GGADHFAAKL
DALFSALSEL PPGAPPDIDG MVGQYAHGNE PSHHIAYLYV YAGQAYKTQA MVRRLLREQY
HDGRDGLSGN EDCGQMSAWF VLSALGMYAV DPVSGIYVIG SPLFPYAELD VGRGRKLRIL
ARHTSASNVY VQALRWNGSP MTRAWLRHTE LAGGGTLEFE MGAQPNLDFG THPQDLPPSF
MALQPVPKHA
|
|---|
| |