| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | XfasM23_1790 |
|---|
| Symbol | |
|---|
| ID | 6202714 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Xylella fastidiosa M23 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010577 |
|---|
| Strand | + |
|---|
| Start bp | 1987445 |
|---|
| End bp | 1989874 |
|---|
| Gene Length | 2430 bp |
|---|
| Protein Length | 809 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 641703301 |
|---|
| Product | 1A family penicillin-binding protein |
|---|
| Protein accession | YP_001830467 |
|---|
| Protein GI | 182682307 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG5009] Membrane carboxypeptidase/penicillin-binding protein |
|---|
| TIGRFAM ID | [TIGR02074] penicillin-binding protein, 1A family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTATCGTC TCCGCGGTTG GCTTGGGTGG CTCCTCACCA TACTTATCAT CCTCACACTC
GTTGGCATCC TGGCAGCGGG CAGTATGTAT TACGCCATTT CCTCGAAACT GCCCGACATT
CGAAACCTCA AACAAGTCGA ACTACAAGAA CCAATGTACG TCTACTCCCA CGATGGCCTG
TTGATAGCGA TATTCGGAGA AATCCGCCGC TACCCTGTGC AGATCAAGGA AGTGCCTGAG
CAACTTAAAC AAGCATTCCT AGCGACCGAA GACGCTCGTT TCTACGAACA CAGCGGCATT
GACTATAAAG GAATTGCACG CGCAATTTGG CTACTAGCGA CAACAAACGA AAAACGTGTC
CCAGGTGGTT CAACGATTAC TCAACAGGTT GCCCGCCAAT TCTTTCTCAA CTCCGAATAC
AGCTATAAAC GCAAACTGGC TGAAATTCTA TTAGCTCGAA AAATAGAGTC GCAGTTAAAG
AAAGACGAAA TCCTGGAGCT GTATCTAAAC AAAAGTTTTT TCGGAAACCG TGCCTACGGC
ATCGCTGCTG CAGCCGAGTT TTACTACGGC AAGAAACTAA ACGAACTTAA CCTTGATGAG
ATGGCATCCT TAGCTGGGAT CCCCAAATTT CCATCAAGCG GCAACCCGAT TACCAACCCG
GCTCGTGCCC GCGAACGGCG TGATTTATAC GTACTACAAC GCATGGTCGA CCTTAACTTC
ATCACCCAAG ACCAAGCCAA TGCCGCAAAA GCAATACCGA TGCACGCCAA ACCCCACGAA
CCACCAGTCC AGGTATACGC CCCCTACGCA GCCGAAATGG TACGTCAGGA AATGATCGCC
AAATACGGTG GTGCCGCACT CAACAAAGGC TATCACGTCA CCACCACGAT TGATGGCACA
CTTCAAATGG CCGCCGAAAC TTCCGTACGC AACGGCCTAG CGTTATATGA ACATCGCCAC
CGTTGGCGAG GTGCCGAACA ACATATCGAA GTGGATGCAA ACGCAGACAC AGCTACATTA
GCTGCACACC TGTCAGGCAT TTCCTCCCAA GGTGGGATGT TCCCAGTGAT CGTGGCACGT
ACCACTCCCG AAGGCAGCGC CATCGTGGTA CGTAGTGATC GCAGCGAATT GACGCTCCCC
CCGGCAGCCT CGCGCTGGAC CGGCACTCCA CTGAACAAAC TCCTCAAACG TGGTGACGTG
GTGCGGGTCA GGCCTGGGGA AAAACGGGGT GAATGGACAT TAGAACAGCT ACCCAGCGCT
CAATCCACAT TGGTCTCACT AGATGCCAAC AATGGCGCAC TACGTGCACT CGTCGGTGGC
TTCAGCTTCA CCGCTAATAA ATTCAATCGC GCCACCCAAG CACGCCGCCA ACCTGGGTCG
AGCTTCAAGC CATTCGTCTA TTCAGCCGCA TTAGAAAAAG GCTTCAATCC AGCGTCCATC
GTACCGGATG CACCTGTCAT ATTCCGCGAT CGCCGCGGCC ATACCTGGTC GCCACAGAAC
GATGACGGCA AATTCCAAGG TCCAATGCGT ATCCGTGACG CCCTGGTTCA ATCACGCAAC
CTAGTATCAG TACGACTACT CGACGCAATC GGCATAGATT TTGCACGCAA CTACATTACC
CAATTCGGTT TTGAGGAAAA CGAGATTCCT CCAAACTTAT CAATGTCTCT GGGTACAGCC
TCACTCACTC CATTGTCGAT CGCGCGCGGT TACGCAGTAT TTGCAAACGG CGGCTTCCGC
ATCGACCCTT GGCTTATTGA CGAGATACAC GACAGAGAAC ACAAATTAAT CTTCAAGAAC
AACCCTAAGG TAGCCTGTAG CAGCTGCACG TCGGCCAACA CCAACGTCAC TCAATCAACC
AGCCACCTAG TGGACGGATT CAACTTTGGC GCACCCACCA AAACAGAACC ATCCAAACCA
GTAAAAAACA ACAACGAACC TACCCAGACC ATCCCTTCAC CGGATCCCAA CACCCCAATG
GCACCGCGCG CGATTGATGA ACGCGTTGTC TTCCAATTGG TATCAATGAT GCGCGACGTG
GTGCTACGCG GTACAGCAAC CGCAGCACGC TCACTGAATC GCCAGGACAT CGCCGGAAAA
ACTGGCTCAA CCAACGAACA CCGTGATGCG TGGTTCTCAG GGTTTGGCGG ACCTTATGTA
ACTACCGTAT GGGTAGGACG CGATGACTTC CAGTCACTTG GTTACAGAGA GTATGGCGGT
AAAGCAGCAC TCCCCATCTG GATCGAATAT ATGCGCACTG CATTGAAGGA CAAACCAATC
GCACGCAACG CCCCCCCTCA AGGCATGACT CAAACCACAC TCAACGGAGC AACCGAATGG
GTCAAAAACG AAGATATAAA CCACTTACAA GATCATGATT TCAAGTTGCA TGAAGAAGAA
AGTGATGAAC AGACCTTTGA CATCTTCTGA
|
|---|
| Protein sequence | MYRLRGWLGW LLTILIILTL VGILAAGSMY YAISSKLPDI RNLKQVELQE PMYVYSHDGL
LIAIFGEIRR YPVQIKEVPE QLKQAFLATE DARFYEHSGI DYKGIARAIW LLATTNEKRV
PGGSTITQQV ARQFFLNSEY SYKRKLAEIL LARKIESQLK KDEILELYLN KSFFGNRAYG
IAAAAEFYYG KKLNELNLDE MASLAGIPKF PSSGNPITNP ARARERRDLY VLQRMVDLNF
ITQDQANAAK AIPMHAKPHE PPVQVYAPYA AEMVRQEMIA KYGGAALNKG YHVTTTIDGT
LQMAAETSVR NGLALYEHRH RWRGAEQHIE VDANADTATL AAHLSGISSQ GGMFPVIVAR
TTPEGSAIVV RSDRSELTLP PAASRWTGTP LNKLLKRGDV VRVRPGEKRG EWTLEQLPSA
QSTLVSLDAN NGALRALVGG FSFTANKFNR ATQARRQPGS SFKPFVYSAA LEKGFNPASI
VPDAPVIFRD RRGHTWSPQN DDGKFQGPMR IRDALVQSRN LVSVRLLDAI GIDFARNYIT
QFGFEENEIP PNLSMSLGTA SLTPLSIARG YAVFANGGFR IDPWLIDEIH DREHKLIFKN
NPKVACSSCT SANTNVTQST SHLVDGFNFG APTKTEPSKP VKNNNEPTQT IPSPDPNTPM
APRAIDERVV FQLVSMMRDV VLRGTATAAR SLNRQDIAGK TGSTNEHRDA WFSGFGGPYV
TTVWVGRDDF QSLGYREYGG KAALPIWIEY MRTALKDKPI ARNAPPQGMT QTTLNGATEW
VKNEDINHLQ DHDFKLHEEE SDEQTFDIF
|
|---|
| |