Gene XfasM23_1785 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagXfasM23_1785 
Symbol 
ID6203035 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameXylella fastidiosa M23 
KingdomBacteria 
Replicon accessionNC_010577 
Strand
Start bp1982380 
End bp1984290 
Gene Length1911 bp 
Protein Length636 aa 
Translation table11 
GC content48% 
IMG OID641703296 
Producttype IV pilus secretin PilQ 
Protein accessionYP_001830462 
Protein GI182682302 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG4796] Type II secretory pathway, component HofQ 
TIGRFAM ID[TIGR02515] type IV pilus secretin (or competence protein) PilQ 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.0622717 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGATTGATT TAAGGGATAG AATGATGACT TTATTTGAAG TCTTAGGCTT GCGTTTTGTT 
AGGCGTATAG CCTCGCTTCG CGTATGTGAA ATTTGGGTAT GCATAGCTTT CGCTTGGTGT
TGCATCCCAG GAACCGTATC GGCTGAAAAC AAGCAAGCGA TTCCAGTGGC TAAAGCTACC
AATGCGCCAC TAAGCGTTTC CAAAATCGAT TTCAAACGTG GTGATGATGG CTCTGGCCGT
CTGATTTTGA AGTTTGATGG GCAGGGAGCC ACTCCTGACC TGCGTACGCA GGGTGGCACC
GTGCTGGTTG ACCTGGGGAC AGCTGTGTTG CCGACTGTCT TGCAACGCCA GATCAACGTT
GTTGACTTTG CTACCCCAGT GCAGCGTATC GACGCTAAGC CTATGGGTAA GGGTGCACAA
CTTGTGTTGA GCACGAAGGG AGCGTTTGAG TCGCTTGCTT ACCAGACAGG GGATGAATAC
GTGGTTGAAA TTGTGCCACG CAAGGGAGAG GCTGCCATGG GTGGGGCGAT CACCCCAGAA
TCGGTCAGTA AGTCCGCAGC GAAGATTTCC GCACAAGGGT ACAGTGGTCG TCCAGTAACG
TTTAACTTCC AAGACGTTCC AGTACGAACG GTTTTGCAGT TGATCGCTGA TGAGTCCAAT
CTCAATATTG TTGCTTCCGA CACTGTGCAA GGTAATGTCA CTCTACGTTT GATTAATGTG
CCATGGGATC AAGCGCTCGA CATCGTTTTG CGTGCTAAAG GATTGGATAA GCGCCGTGAT
GAGAAAGTAA TTTGGGTTGC GCCGCAACAG GAGCTTGCTA AATACGAGCA AGAAAAAGAG
GACGCGCGGA TCGCGATCGA AAATCGTGAG GGGTTAATTA CCGATTATGT CCAAATAAAT
TATCATTCGG CCACGGTCAT TTTTAAGGCA CTGACAGAAG CCAAAGGTAT GGGTGGGGGA
GGTAACGGTA CACCTAATAA TAATAGTGAT GATGCTTTCT TATCGCCACG TGGTCGGCTT
GTGGCTGATG AGCGCACTAA TACGTTGATG ATTAGCGATA TTCCGAAGAA AGTTGCGCAA
ATGCGTACTC TTATCCAGCA TATTGATCGT CCTGTGGACC AAGTGTTGAT TGAGGGCCGC
ATCGTGATCG CCACCGATAG CTTCGCGCGT GATTTGGGGG CCAAGTTCGG TGTTGGTGCT
GCTAGTCGTT TCAGCGATAA CACTGCAACG ATCGGTAGTA ATGTGACTGC TGGCAGCTCC
ACATCGGCTA CGCGGGGGCT TAATGTTGAT TTGGGCGGTC CGACCAACAC CACTGCTTCA
GTTCTTCCGA GTTTAGCCTA CACTTTGCTT GGACCTAAAT TTAATCTAGA TCTTGAGCTT
TCGGCATTGC AGCAGGAATC CCGTGGCGAG GTGATTTCAA ACCCTCGTAT TGTCACTGCA
AACCAGCGTG AGGGATATAT CAAACAAGGT AAGGAAATTG GGTATGTCAC GATCACTGGA
GGAGTCGCTG GTGGTCAAGC CACTCCGAAT GTCCAATTTA AAGAGGCTGT TTTGGAGTTG
CGTGTGACCC CAACGATCAC CAATGACAAC CGTGTGTTTC TCAACATGAC TGTCAAGAAG
GACGAGATTG ATCAAATGAT TACGATCGCC AATTTCGGTA CCGTGCCGAC CTTGAACAAG
CGTGAGATCA ACACTGCCGT ATTGGTTGAT GATGGTCAAA CTGTTGTTAT CGGTGGTGTA
TATGAGTTTT CCGACCGTAA TAGTGTGAGT AAGGTTCCGT TCTTAGGGGA TGTGCCTTTC
CTTGGTAATT TGTTTAAGAA ACGTGGTAAA GATAAACAAA AGGCCGAGCT TTTGATTTTC
GTGACTCCTA AGGTGTTGCG TGTGGCTAAT GCTACTGCTG CGGTGCATTG A
 
Protein sequence
MIDLRDRMMT LFEVLGLRFV RRIASLRVCE IWVCIAFAWC CIPGTVSAEN KQAIPVAKAT 
NAPLSVSKID FKRGDDGSGR LILKFDGQGA TPDLRTQGGT VLVDLGTAVL PTVLQRQINV
VDFATPVQRI DAKPMGKGAQ LVLSTKGAFE SLAYQTGDEY VVEIVPRKGE AAMGGAITPE
SVSKSAAKIS AQGYSGRPVT FNFQDVPVRT VLQLIADESN LNIVASDTVQ GNVTLRLINV
PWDQALDIVL RAKGLDKRRD EKVIWVAPQQ ELAKYEQEKE DARIAIENRE GLITDYVQIN
YHSATVIFKA LTEAKGMGGG GNGTPNNNSD DAFLSPRGRL VADERTNTLM ISDIPKKVAQ
MRTLIQHIDR PVDQVLIEGR IVIATDSFAR DLGAKFGVGA ASRFSDNTAT IGSNVTAGSS
TSATRGLNVD LGGPTNTTAS VLPSLAYTLL GPKFNLDLEL SALQQESRGE VISNPRIVTA
NQREGYIKQG KEIGYVTITG GVAGGQATPN VQFKEAVLEL RVTPTITNDN RVFLNMTVKK
DEIDQMITIA NFGTVPTLNK REINTAVLVD DGQTVVIGGV YEFSDRNSVS KVPFLGDVPF
LGNLFKKRGK DKQKAELLIF VTPKVLRVAN ATAAVH