| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | XfasM23_1470 |
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| Symbol | rumA |
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| ID | 6202458 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Xylella fastidiosa M23 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010577 |
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| Strand | - |
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| Start bp | 1621457 |
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| End bp | 1622863 |
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| Gene Length | 1407 bp |
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| Protein Length | 468 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 641702983 |
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| Product | 23S rRNA 5-methyluridine methyltransferase |
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| Protein accession | YP_001830155 |
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| Protein GI | 182681995 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG2265] SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase |
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| TIGRFAM ID | [TIGR00479] 23S rRNA (uracil-5-)-methyltransferase RumA |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.00598904 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGGATGGTG GGCTGGGTTC AGTATGGAAC GCAATCTGCG ACAATGTTTC GAATCTTATT
TGCAGTGTTT CTTTTGTGGC TCGCCAAAAT CGTTTCGATC GTACGTCATT TCAAACGCAG
ATTATTGATC TCAGTCATGA TGGGCGTGGG GTTGCACGAC CTCATGGCGA GGGAGGTAAG
GTGACTTTCG TCACTGGCGC GCTTCCAGGT GAGGTGGTGA TTGTTGAGCC AGTTGCGCGT
AATCGTCATT TTGATGAGGC ACGTGTCGTT GAGGTGTTGC AGGCATCGCC GCAACGGGTG
ATACCGCGTT GCTCGCATTT TGGTGTCTGT TCTGGTTGTG TATTGCAGCA TTTGGCTGAA
GATGCGCAGG TTGTGTCGAA GCAACGGGTG TTGTTGGAAA GTTTGGAACG TATTGGTTGT
GTCAGTCCGG AGCGTGTGTT GCCGGCGTTG GCCGCGGAGA GCTGGGGGTA TCGGCGTAAG
GGGCGTTTTT CTGTACGTTG GGTTGAGAAA AAGGGGAGGA CGCTGGTTGG TTTCCGTGAG
CATGATCCGC GTTTTGTTGC CGATGTGTCG GTCTGTCATA CAGTGGTTCC GCAGGTCGGT
GAAAAAATTG CGCTTTTGGC AACGTTGCTT GACAGTTTGG ACGGTAGGTG TGACGTACCG
CAGATTGAGT TTATTGCCGG TGATGCTGTT GTGGCATTAA CGGTGCGTCA TTTGCAGCCG
TTGAGTGAGG CGGATCGTTT GGCGCTGATT GAGTTTGGCA AGGAGCATGG TATTGCAATT
TTTTTGCAGT CGGGTGGGGT GGAGAGTGTG CGTTTGTTGT GGCCTGATGA GGTGTTGTTG
GCATTTCGCT TGAAGCCTTG GGATGTGGAG TTTGTGTTCC GTCCGCTGGA TTTCATTCAG
ATCAATGGTG GGCTGAATGA GAAGATGATT GCGCATGCTT TGGATCTGCT CGGTGCTGGA
TTTGGGGAGC GTGTGCTCGA TCTGTTTTGT GGTTTGGGTA ACTTCACGTT GCCGTTGGCG
CGTACTGTGG GTGAGGTGGT TGGAGTGGAG GGTGATATTG GGCTGGTGGA GCGGGCCAGG
GAGAATGCAC GGCGTAATGG TTTGGGGAAT GCTGAATTTT TTGTTGCTGA TTTGACCCGT
GATCAACGCG ATGCGCCGTG GATGCGTCAG GGCTTTGATA AGTTGCTGTT GGATCCGCCG
CGTTCCGGAG CGATTGAGGT ACTCAAGCAG TTGCCGTTAA AGATGTTCGA ACGCATCGTT
TATGTCAGTT GTCATCCTGG ATCTCTGGCG CGTGATGCTG ATTTCCTTGT CAATGAACAG
GGCTTTGTGT TGCGTGCGGT TGGGGCGATG GACATGTTTC CGCATACTGC GCATGTGGAG
AGTATTGCTG TATTTGATCG TTGCTGA
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| Protein sequence | MDGGLGSVWN AICDNVSNLI CSVSFVARQN RFDRTSFQTQ IIDLSHDGRG VARPHGEGGK
VTFVTGALPG EVVIVEPVAR NRHFDEARVV EVLQASPQRV IPRCSHFGVC SGCVLQHLAE
DAQVVSKQRV LLESLERIGC VSPERVLPAL AAESWGYRRK GRFSVRWVEK KGRTLVGFRE
HDPRFVADVS VCHTVVPQVG EKIALLATLL DSLDGRCDVP QIEFIAGDAV VALTVRHLQP
LSEADRLALI EFGKEHGIAI FLQSGGVESV RLLWPDEVLL AFRLKPWDVE FVFRPLDFIQ
INGGLNEKMI AHALDLLGAG FGERVLDLFC GLGNFTLPLA RTVGEVVGVE GDIGLVERAR
ENARRNGLGN AEFFVADLTR DQRDAPWMRQ GFDKLLLDPP RSGAIEVLKQ LPLKMFERIV
YVSCHPGSLA RDADFLVNEQ GFVLRAVGAM DMFPHTAHVE SIAVFDRC
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