Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | XfasM23_1378 |
Symbol | |
ID | 6202307 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Xylella fastidiosa M23 |
Kingdom | Bacteria |
Replicon accession | NC_010577 |
Strand | - |
Start bp | 1525110 |
End bp | 1527017 |
Gene Length | 1908 bp |
Protein Length | 635 aa |
Translation table | 11 |
GC content | 53% |
IMG OID | 641702897 |
Product | 1-deoxy-D-xylulose-5-phosphate synthase |
Protein accession | YP_001830070 |
Protein GI | 182681910 |
COG category | [H] Coenzyme transport and metabolism [I] Lipid transport and metabolism |
COG ID | [COG1154] Deoxyxylulose-5-phosphate synthase |
TIGRFAM ID | [TIGR00204] 1-deoxy-D-xylulose-5-phosphate synthase |
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Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGATTGATT TCACTTGTTA TCCACGTTTG TCGCGTATCC AAACTCCAGA GGATCTCCGC GCTTTTCAGG AGTCGGAGTT GCGTGCGGTT GCCGATGAGT TGCGGAATTA TCTGATCGAA TCAGTAGGCC TCAGTGGTGG TCACTTTGCT GCTGGGTTGG GTGTGGTCGA ATTGACGATC GCTTTGCATT ATTTGTACTG CACTCCTATT GATCAGCTTG TCTGGGACGT GGGTCATCAA ACGTATCCGC ATAAGATATT GACCGGTCGC CGTGACAAGA TTAGTACGGT TAAGCATCAA GGTGGTTTGG CACCGTTTCC TAAGCGTGAG GAGAGTATCT ATGACACGTT CGGTGTCGGT CATTCTTCTA CTTCTATTTC AGCTGCGCTT GGGATGGCGA TTGTGGCGCA GCGTAATGGG GATGAGCGTA AGGTGGTGGC CATCATCGGC GATGGTGCGA TGACAGCGGG GATGGCTTAT GAGGCGCTTA ATCATGCTGG CGGGATGAGT CCTGCACCGA ATCTTCTTGT GATTCTTAAC GACAATCGTA TGTCGATTTC CGAAGCGGTC GGTGGGCTTA CCAAGATGCT TGGTCGTGCG ACTGGCAGCA AAGCATTGAA TGCGATCCGT GAGGGTGGCA AGAGAATTTT TGGGGATAAG AAAACCAATG CAACTGCGCG TTTTTTACGT CGTTGGGAGG AGCATTGGAA GGGGATGTTT GTGCCGTCGA CGTTGTTCGA AGAGATGGGG TTCCATTATA CCGGCCCGAT TGATGGCCAT GATTTGCCGG CCCTTCTTGG TGCGTTGAAG ACGTTGCGTA CGTTGAAGGG TCCACAGTTG TTGCATGTGA TCACAACCAA AGGGAAGGGG TATGAGCTGG CTGAGGGAGA CCAGATTGGT TACCACGCCG TCGCCCCGTT TGATCCGCAA AAGGGTCTGA TTAAGGCGGG AGCAAAGAAG CAAACATATA CGGACGTGTT TAGTGAGTGG TTGTGTGATA TGGCAGCGGT GGAACCACGT TTGCTGGCTA TTACACCGGC GATGCGTGAG GGATCGGGGT TGGTGCGTTT TAGTCAGGAG TATCCGCAGC GTTATTTTGA TGTGGCCATT GCTGAGCAGC ACGCGATAAC GTTGGCGGCT GGTATGGCGA CTCAAGGTGC TAAGCCTGTG GTGGCGATTT ACTCGACCTT TTTGCAGCGT GGTTACGATC AATTGGTTCA CGATGTTGCG TTGCAGAAGT TGGATGTGCT TTTTGCAGTA GATCGCGGTG GTGTGGTTGG TCCAGATGGT GCGACGCATG CGGGTAATTT GGATCTCAGT TTCCTGCGTT GCGTGCCAAA CATGATGTTG ATGGCTCCTG CCGATGAGGC AGAGTGCCGG AAGATGTTGA GTACCGGTTT CCACTATTCT GGGCCAGTAG CGGTGCGTTA TCCGCGTGGG ACGGGTCCTG GGGTGGTTCC GTCCGCTGAG TTGGATGTGT TGCCGGTTGG TGTGGCGCAG TTACGTCATT CTGGTACACG GATCGCTCTA CTTGGTTTTG GGGTGTGCGT TGCTCCTGCT GAACAGGTGG GGCGTAGGCT TGGTTTGACT GTGGTCAATA TGCGTTTTAT CAAACCGTTG GATCGAACGT TGCTGTTGGA GTTGGCGCGT ACTCACGAAG TGTTTGTCAC GATTGAAGAT AATGTAGTTG CTGGCGGAGC TGGCTCAGGG GTTGCGGAAT TACTTAACGC TGAAGGCATC GTTTTGCCGA TTGTGCATCT TGGTCTTCCA GATGCGTTCC AGCAGCACGC TTCCCGTGAG GATTTACTGG CTGAGGCGGG TATTGATGCG GCTGGTGTGT ACGCTGCGCT GTTAAGTCGT TGGCCTGATT TGGCGGTGCA GAACCATCCG CTGAGTGCGG TGAGTTGA
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Protein sequence | MIDFTCYPRL SRIQTPEDLR AFQESELRAV ADELRNYLIE SVGLSGGHFA AGLGVVELTI ALHYLYCTPI DQLVWDVGHQ TYPHKILTGR RDKISTVKHQ GGLAPFPKRE ESIYDTFGVG HSSTSISAAL GMAIVAQRNG DERKVVAIIG DGAMTAGMAY EALNHAGGMS PAPNLLVILN DNRMSISEAV GGLTKMLGRA TGSKALNAIR EGGKRIFGDK KTNATARFLR RWEEHWKGMF VPSTLFEEMG FHYTGPIDGH DLPALLGALK TLRTLKGPQL LHVITTKGKG YELAEGDQIG YHAVAPFDPQ KGLIKAGAKK QTYTDVFSEW LCDMAAVEPR LLAITPAMRE GSGLVRFSQE YPQRYFDVAI AEQHAITLAA GMATQGAKPV VAIYSTFLQR GYDQLVHDVA LQKLDVLFAV DRGGVVGPDG ATHAGNLDLS FLRCVPNMML MAPADEAECR KMLSTGFHYS GPVAVRYPRG TGPGVVPSAE LDVLPVGVAQ LRHSGTRIAL LGFGVCVAPA EQVGRRLGLT VVNMRFIKPL DRTLLLELAR THEVFVTIED NVVAGGAGSG VAELLNAEGI VLPIVHLGLP DAFQQHASRE DLLAEAGIDA AGVYAALLSR WPDLAVQNHP LSAVS
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