| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | XfasM23_0872 |
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| Symbol | |
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| ID | 6202202 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Xylella fastidiosa M23 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010577 |
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| Strand | + |
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| Start bp | 1025845 |
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| End bp | 1030167 |
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| Gene Length | 4323 bp |
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| Protein Length | 1440 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 641702403 |
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| Product | YadA domain-containing protein |
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| Protein accession | YP_001829582 |
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| Protein GI | 182681422 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport
[W] Extracellular structures |
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| COG ID | [COG5295] Autotransporter adhesin |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.263955 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCAAATTC ATACTGCACT GCCCATGGTT CGGTTGGGTG GAATCGAAGG TGTTGATCCA
TTATTTTTGC CGAAATACAA GATCGGTCGG TCGCTGCAAC ACGCAGTGAT GACATCAGCA
GCTTCAAGTA AAAAAGGTAC GCAGCCACGA CGTTCCAACA ATGCGATGAC AGCTAAGCGT
AGCGCGAAAC CGCACGACCG GAGGCAGTTG CATATTGTCT TATTGACAGT GCTTGCAGCC
TCAACGGGAT ATACGGGGAA AGTATCAGCT CAAGTCTATG TAAATTCCGA CTCGACTGAA
AATTGCGTAG AAATACTGGG CGACAGTAGT CAGACATCCT TCATTCATAG TGCTTCTAAC
GATAAATGCA AGCCAGATTT CACACAAACA GAGTATTCCC TGTTTTATGA CTATAGAAAC
CTGGTTCTTG GTGGGTCCTT ATATGTCAAT GAGGGTAAAC TCGGGCTAGT CGATATTTCT
GGTGCAACTT ATTCTATGCG CCTAGGCAGC ATTGCTACCA TGAATGGCTC GGCTGGCATA
GATTCGATTG CCATCGGTTC AGGGCAAGGT TCCCAAACGG ACGGGAATAC CAGCGGCGCC
ACTGTAGCAC AGGGACTGCG TTCGATTGCG ATTGGTACTA CGGCCCGTTC GCAATCTCAA
GATGCGATTT CTATAGGGAC CGGTGCATCC ACTACAGGCA ATTTTGCGAT AGCGATAGGT
AATGGAGCAT TGACATCAAT TGCCAATGGG ATAGCGCTTG GTGCATCAAG CAGTGTCACC
ACAAGAGGAG GTGTGGCACT GGGACAAGGC TCGCTGGCTG CGACCGCTTC TGGCATTACT
GGCTATGATC CGGTCACCAA GAGCACCTCG ACTCTTTCCA CTTCAATATG GAGAAGCACG
CTGGGGGCAG TCAGTATCGG TAATATAACC TCTAGCACCT CCCAGACACG TCAACTTACA
GGATTGGCGG CAGGTAGGTC AGATACGGAT GCGGTGAATG TTGCCCAGCT GAAGTTGCTT
GCTGAATCTG TGGGTGGTGG TTGGAATTTG ACTGCTTCTG GAGCCAACAG CAGTAATGTG
GCGCTGGGTG AGTCGGTAGA TTTGAAGAAT AGTGACGGAA ACCTCTTAAT CACCAAAGCA
ACCGACAGCA ATGATGTGAC TTTTAATTTG GCCACTGCTT TAAAAGTGGA CAGTTTGACC
ACTGGCAACA CGGCGATGAC GACCGATGGT GTGACGGTGG GCAAGAGAGT TACCTTGGAT
TCGACAGGAT TAGTGATTGC GGAAGGTCCC TCGGTAATCA GTTCGGGCAT TAATGCTGCC
GGCCAAAAGA TCATCAATGT TGGAACGGGT ACTGCGGATA CAGACGCCGT CAACTTCGGT
CAGCTGCAAG CGGTGAGCGA TACAGCAAGC AAGGGCTGGA ATTTGCTAGC TTCTGGAGCC
AACAGCAGTA ATGTGGCGCC GGGTGAGTCG GTGGATCTGA AGAATAGTGA TGGGAACCTC
TTAATCACCA AAACAACCGA TAGCAATGAT GTGACTTTTA ATTTGGCCAC TGCTTTAGAA
GTGGACAGTT TGACCACTGG CAACACGGCG ATGACGACCG ATGGTGTGGC GGTGGGTAGT
AACGTGAAGT TGGGCTCGAC GGGATTAGTT ATTACAGATG GTCCGTCTGT GACCAGCTCG
GGCATTAGCG CCGGTAACCA AAAGATAACG AATGTTGCCG CAGGTACTGC GGATACCGAT
GCCGTCAACT TTAGCCAGTT GCAAGCGGTG AGCAGTACGG CCAGTAAGGG GTGGAATTTG
CTGGCTTCTG GAGCCAACAG TAGTAATGTG GCGCCGGGTG GGTCGGTGGA TCTGAAGAAT
AGTGATGGGA ACCTCTTAAT CACCAAAACA ACCGACAGCA ATGATGTGAC TTTTAATTTG
GCCACTGCTT TAGAAGTGGA CAGTTTGACC ACTGGCAACA CGGCGATGAC GACCGATGGT
GTGGCGGTGG GTAGTAACGT GAAGTTGGGC TCGACGGGAT TAGTTATTAC AGATGGTCCG
TCTGTGACCA GCTCGGGCAT TAGCGCCGGT AACCAAAAGA TAACGAATGT TGCCGCAGGT
ACTGCAGATA CCGATGTCGT CAACTTTAGC CAGTTGCAAG CGGTGAGCAG TACGGCCAGT
AAGGGGTGGA ATTTGCTGGC TTCTGGAGCC AACAGTAGTA ATGTGGCGCC GGGTGGGTCG
GTGGATCTGA AGAATAGTGA TGGGAACCTC TTAATCACCA AAACAACCGA CAGCAATGAT
GTGACTTTTA ATTTGGCCAC TGCTTTAGAA GTGGACAGTT TGACCACTGG CAACACGGCG
ATGACGACCG ATGGTGTGGC GGTGGGTAGT AACGTGAAGT TGGGCTCGAC GGGATTAGTT
ATTACAGATG GTCCGTCTGT GACCAGCTCG GGCATTAGCG CCGGTAACCA AAAGATAACG
AATGTTGCCG CAGGTACTGC AGATACCGAT GTCGTCAACT TTAGCCAGTT GCAAGCGGTG
AGCAGTACGG CCAGTAAGGG GTGGAATTTG CTGGCTTCTG GAGCCAACAG TAGTAATGTG
GCGCCGGGTG GGTCGGTGGA TCTGAAGAAT AGTGATGGGA ACCTCTTAAT CACCAAAACA
ACCGACAGCA ATGATGTGAC TTTTAATTTG GCCACTGCTT TAGAAGTGGA CAGTTTGACC
ACTGGCAACA CGGCGATGAC GACCGATGGT GTGGCGGTGG GTAGTAACGT GAAGTTGGGC
TCGACGGGAT TAGTTATTAC AGATGGTCCG TCTGTGACCA GCTCGGGCAT TAGCGCCGGT
AACCAAAAGA TAACGAATGT TGCCGCAGGT ACTGCAGATA CCGATGCCGT CAACTTTAGC
CAGTTGCAAG CGGTGAGCAG TACGGCCAGT AAGGGGTGGA ATTTGCTGGC TTCTGGAGCC
AACAGTAGTA ATGTGGCGCC GGGTGAGTCG GTAGACCTGA AGAATACCGA TGGAAACATC
GTTATCAGCA AAGAAAGCGG CAGCAATGAT GTGCTTTTCA ATCTGTCCAG CAGTTTGAAG
CTGGACAAAT TGACCGTTGG CGACACGGTG ATGACGACCA ATGGTGTGAC AGTGGGGAGT
GGCGTGACGT TGGGTTCGAT GGGATTAGTT ATTACGGATG GTCCCTCGGT GACCAGTTCT
GGTATTAATG CTGGCAGCCA AAAGATAACG AATGTTGCCG CAGGTACTGC GGACACGGAT
GCTGTTAATC TTAGCCAACT TAATACTGCA ATGGCGAGCT CCGGCGCTAA ATCAGTCCAT
TACTACAGTA CATATGATGG TGGTACCCAA GGAGGTAACT ACAATGGTGA TGGTGCGACA
GGCACTGGGT CTATAGCCGT TGGTGTTGGC ACGCTTGCAT CCGCTGAAGG AGCGACAGCA
ATCGGTTCAG GGGCGGCGGC TAGTGGGAAA GGCTCCACGG CGATCGGTCG TAACGCAGTT
GCCAGCGCTG ATGGTAGCGT GGCCTTGGGC GATGGTGCAA AAGATGGTGC GCGTGGGGCA
GAGAGTTACA CCGGTAAATA TTCAGGCGTA CAGAACAATA CGGTGGGAAC TGTTTCGGTA
GGTGATGCTT CCAAGGGTGA AACCCGCACA GTGAGTAATG TGGCTGATGC CAAAGAAGCG
ACGGATGCGG TGAATTTGCG TCAGCTTGAT CAAGTGGCTC AAGATGCCAA TCGTTATGTT
GATAACAAGA TAGAAAGCCT TAGCGAAGGG CAGACTTTCG TTAAGGTGAA CAGCGTGAAC
AATAGTGCCA CTCCTATTGC AGCTGGAGTC GATGCAACAG CGATTGGTGT CGGTGCCACC
GCTTCTGGTG CCGATAGCAT TGCAATGGGT AATAAAGCCA GTGCGTCTGC TGACAATGCG
GTTGCCATTG GTAACCATTC AGTAGCCGAC CGTGCAAACA CTGTTTCTGT GGGATCGGCT
GGTTCTGAGA GGCAGGTGAC GAATGTAGCC GCTGGCACTG CTGATACTGA TGCGGTCAAT
GTAAGCCAAC TCAATCAAGG CTTGATCACT GCCAAACAGT ATACGGATGG GGTTGTAGGG
AGTCTTCGTA GGGATACTGA CGGTGGTGTG GCGGCAGCAA TTGCAACAGC AAATCTCCCA
CAGGCTTATA TTCCGGGACG CGGGATGACC TCCGTAGGCG TTAGTAGTTA CCGAGGGCAA
TCTGCCATTG CGGTGGGTGT TTCTTCGGTT TCTGAAAGCG GACGTTGGGT ATTCAAGTTC
AGCGGTAGTG CAAATACCCG TAGTCAAGTG GGTATTGGTG CAGGTGTGGG TTATCAGTGG
TAA
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| Protein sequence | MQIHTALPMV RLGGIEGVDP LFLPKYKIGR SLQHAVMTSA ASSKKGTQPR RSNNAMTAKR
SAKPHDRRQL HIVLLTVLAA STGYTGKVSA QVYVNSDSTE NCVEILGDSS QTSFIHSASN
DKCKPDFTQT EYSLFYDYRN LVLGGSLYVN EGKLGLVDIS GATYSMRLGS IATMNGSAGI
DSIAIGSGQG SQTDGNTSGA TVAQGLRSIA IGTTARSQSQ DAISIGTGAS TTGNFAIAIG
NGALTSIANG IALGASSSVT TRGGVALGQG SLAATASGIT GYDPVTKSTS TLSTSIWRST
LGAVSIGNIT SSTSQTRQLT GLAAGRSDTD AVNVAQLKLL AESVGGGWNL TASGANSSNV
ALGESVDLKN SDGNLLITKA TDSNDVTFNL ATALKVDSLT TGNTAMTTDG VTVGKRVTLD
STGLVIAEGP SVISSGINAA GQKIINVGTG TADTDAVNFG QLQAVSDTAS KGWNLLASGA
NSSNVAPGES VDLKNSDGNL LITKTTDSND VTFNLATALE VDSLTTGNTA MTTDGVAVGS
NVKLGSTGLV ITDGPSVTSS GISAGNQKIT NVAAGTADTD AVNFSQLQAV SSTASKGWNL
LASGANSSNV APGGSVDLKN SDGNLLITKT TDSNDVTFNL ATALEVDSLT TGNTAMTTDG
VAVGSNVKLG STGLVITDGP SVTSSGISAG NQKITNVAAG TADTDVVNFS QLQAVSSTAS
KGWNLLASGA NSSNVAPGGS VDLKNSDGNL LITKTTDSND VTFNLATALE VDSLTTGNTA
MTTDGVAVGS NVKLGSTGLV ITDGPSVTSS GISAGNQKIT NVAAGTADTD VVNFSQLQAV
SSTASKGWNL LASGANSSNV APGGSVDLKN SDGNLLITKT TDSNDVTFNL ATALEVDSLT
TGNTAMTTDG VAVGSNVKLG STGLVITDGP SVTSSGISAG NQKITNVAAG TADTDAVNFS
QLQAVSSTAS KGWNLLASGA NSSNVAPGES VDLKNTDGNI VISKESGSND VLFNLSSSLK
LDKLTVGDTV MTTNGVTVGS GVTLGSMGLV ITDGPSVTSS GINAGSQKIT NVAAGTADTD
AVNLSQLNTA MASSGAKSVH YYSTYDGGTQ GGNYNGDGAT GTGSIAVGVG TLASAEGATA
IGSGAAASGK GSTAIGRNAV ASADGSVALG DGAKDGARGA ESYTGKYSGV QNNTVGTVSV
GDASKGETRT VSNVADAKEA TDAVNLRQLD QVAQDANRYV DNKIESLSEG QTFVKVNSVN
NSATPIAAGV DATAIGVGAT ASGADSIAMG NKASASADNA VAIGNHSVAD RANTVSVGSA
GSERQVTNVA AGTADTDAVN VSQLNQGLIT AKQYTDGVVG SLRRDTDGGV AAAIATANLP
QAYIPGRGMT SVGVSSYRGQ SAIAVGVSSV SESGRWVFKF SGSANTRSQV GIGAGVGYQW
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