Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | XfasM23_0779 |
Symbol | |
ID | 6203263 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Xylella fastidiosa M23 |
Kingdom | Bacteria |
Replicon accession | NC_010577 |
Strand | + |
Start bp | 917750 |
End bp | 920077 |
Gene Length | 2328 bp |
Protein Length | 775 aa |
Translation table | 11 |
GC content | 53% |
IMG OID | 641702311 |
Product | general secretion pathway protein D |
Protein accession | YP_001829492 |
Protein GI | 182681332 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1450] Type II secretory pathway, component PulD |
TIGRFAM ID | [TIGR02517] general secretion pathway protein D |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.00261901 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGATTTCGC GTCTTTTAAC TGTTTCGATA GTCACTGCCC TTTTGGGTTC TTGTGTTACC CCACCATCGC CGATGATTAA GCGGAATACT CTTCTGCATA AACATCCTGC TACTGCAGAC ATACCGACGA CACAGCTCCC TGACGCTGTG GGGACGGCCA CTGTGCCGCT GCCTGACACT ACGGAGACGC CGAATGCGCT GCTTTCTGAT GCTGGTGGCC CGCTCCCGGT GATTCGTCGT GGTAATGGGG AAGTGATTAA TCAGACTGTT GCTGCAACTC CACCGCCATC AATGGGTGTG GCTGGAAAAG GTAGCGCTAT CTTTAACTTC GAAGGAGAGT CGTTGCAGGC TGTGGTCAAA GCCATTCTTG GCGACATGCT AGGGCAAAAC TATTTCATTG CATCGGGTGT GCAGGGCACG GTGACTCTTT CCACACCTAA GCCTGTCTCG TCGGCACAGG CGCTGAGTCT CTTGGAGATG GTATTGGGTT GGAACAACGC ACGGATGATT TATAACAATG GACGTTACAG CATTGTCCAG GCCGACCAGG CGCTAGCTGG TACGGTTGCG CCGAGTACTG CACCGTCGGC GGTTGCCCGT GGCTTTGAAG TCCGTGTGGT ACCACTGAAG TACATCTCGG CGAGCGAGAT GAAAAAAGTG CTTGATCCAT ACGCACGTCC TAATGCGATT GTCAGCATTG ATACAACGCG TAACCTGATT ACCCTTGCGG GTACCCGTGT TGAGCTAGAG AACTATCTGC GCACTGTTCA AATTTTCGAT GTTGATTGGT TGTCTGGTAT GTCGGTGGGT GTGTTCCCAA TTCAATCAGG CAAGGCGGAT AAAGTTGCTG CCGATTTGGA AAAAGTGTTT GGCGAGAGCG GAAAAACGCC TAGCGCCGGT ATGTTCCGTT TTATGCCTCT GGAGAGTGCT AACGCTGTTT TGGTGATTAC CCCACAGGCT AGTTATCTGG ATCAGATTCA GAAATGGTTG GATAGTGTCG ACAGTGTTGG AGGTGCTTTG AGTTTGTTCT CTTACGCGCT GAAGTACATC AAGGCCAATG ATTTAGCTAA TCGTCTGGCG GAAGTATTTG GGGTCGGTGC TAGGCGTGAA GATAGTAATG TGTCGCTGGC TCCAGGCGCG CAACTTGGCG TCTTGGGAAG TGGCGGCAGT GGCGATAACC TGCCAAGTGC TGGTGGTGGC GGTAGCCTTT CTGCTGTTCC CAGTAACGGA GGGGCGGATA ACACGAGCAG TGCGAATGGT GGTTTGGGGG GCAGTACGCT CCAGTTGTCA CCACGCACCC AAGGCAATGG CAGTGTGACT CTTCATGTGC AGGGCGATAC CGTCGGTGTG TCGGCGGTGG AGGAAATTAA TACCTTGCTG GTCCGTGCGA CTCCCCAAGC GTGGAAATCG ATACGTGATG TGATTGAGAA GCTTGATGTG ATGCCGATGC AGGTACATAT CGAAGCTCAG GTCGCTGAAG TCAGCCTCAC CAACCAGCTC AGCTATGGTG TGAATTGGTT TTTCCAGAAT TCTGTAAATG CTGCTGCTGA TGCGGCGGAT AATGGCGCTT CCAACGGGAC TGGCATTGGC CTAGGTGCGG GCCTGCCTAG TGCCGCTGCG CGTTCGGGGT GGAAGAGCAT TGCCGGTAAG GTCACCAGCA ATGGGTTGGC TTGGACGTTC CTTGGAAAGA ACGCCGCAGC GATTATCAAT GCATTGGACC AAGTCACCCA GGTCCGTTTG CTACAGACGC CGTCAGTATT CGTGCGTAAC AACGCCGAGG CCACGCTCAA CGTGGGTGCG CGTATTCCAA TCAATTCCAC CTCAATTAAC ACCGGTCTGG GCAGTAACAG TACCTACTCC TCAGTGCAGT ACATTGATAC TGGCGTCATT TTGAAAGTGC GTCCGCGCGT GACTAAGGAC GGAATGGTGT TTTTGGACAT CGTACAGGAG GTCAGCACCC CTGGTTCACT GCCAGCGGCA TGTAGCTCTG CTAGTTCGAC GTTGGTTAAC AGTGCCGCGT GCAATGTCCA GATCAACACA CGCAGGATTA AGACGGAGGC CGCGGTGCAG AGTGGCGATA CGATCATGCT TGCTGGCCTG ATTGACAGTA ATAGCGGTAA AGGCAGTAAC GGGGTCCCGT TCCTGAGTAA GGTGCCGATA GTCGGTGGGT TGTTTGGTAC GAAGGCGCAG AATAATAATC GCCGGGAAAT CATTGTGTTA CTGACCCCAG AGATTGTGCG TAACCCTCAG GAGGCGCGCA ATCTTACTGA TGAATACAGT CAAAAATTCA ACGCAATGGA GCCATTACCA GGATTGAATA CAAAATGA
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Protein sequence | MISRLLTVSI VTALLGSCVT PPSPMIKRNT LLHKHPATAD IPTTQLPDAV GTATVPLPDT TETPNALLSD AGGPLPVIRR GNGEVINQTV AATPPPSMGV AGKGSAIFNF EGESLQAVVK AILGDMLGQN YFIASGVQGT VTLSTPKPVS SAQALSLLEM VLGWNNARMI YNNGRYSIVQ ADQALAGTVA PSTAPSAVAR GFEVRVVPLK YISASEMKKV LDPYARPNAI VSIDTTRNLI TLAGTRVELE NYLRTVQIFD VDWLSGMSVG VFPIQSGKAD KVAADLEKVF GESGKTPSAG MFRFMPLESA NAVLVITPQA SYLDQIQKWL DSVDSVGGAL SLFSYALKYI KANDLANRLA EVFGVGARRE DSNVSLAPGA QLGVLGSGGS GDNLPSAGGG GSLSAVPSNG GADNTSSANG GLGGSTLQLS PRTQGNGSVT LHVQGDTVGV SAVEEINTLL VRATPQAWKS IRDVIEKLDV MPMQVHIEAQ VAEVSLTNQL SYGVNWFFQN SVNAAADAAD NGASNGTGIG LGAGLPSAAA RSGWKSIAGK VTSNGLAWTF LGKNAAAIIN ALDQVTQVRL LQTPSVFVRN NAEATLNVGA RIPINSTSIN TGLGSNSTYS SVQYIDTGVI LKVRPRVTKD GMVFLDIVQE VSTPGSLPAA CSSASSTLVN SAACNVQINT RRIKTEAAVQ SGDTIMLAGL IDSNSGKGSN GVPFLSKVPI VGGLFGTKAQ NNNRREIIVL LTPEIVRNPQ EARNLTDEYS QKFNAMEPLP GLNTK
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