| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | XfasM23_0439 |
|---|
| Symbol | rpsC |
|---|
| ID | 6203110 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Xylella fastidiosa M23 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010577 |
|---|
| Strand | + |
|---|
| Start bp | 539886 |
|---|
| End bp | 540605 |
|---|
| Gene Length | 720 bp |
|---|
| Protein Length | 239 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 641701973 |
|---|
| Product | 30S ribosomal protein S3 |
|---|
| Protein accession | YP_001829160 |
|---|
| Protein GI | 182681000 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0092] Ribosomal protein S3 |
|---|
| TIGRFAM ID | [TIGR01009] ribosomal protein S3, bacterial type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.0792432 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGGGCATA AAGTTCATCC GATTGGAATT CGTTTGGGTA TATCTGCAGA TTGGAATTCC
AAGTGGTACG CAAATAAGGC TGAATTTGCG CGGTATTTGG CCGCAGATCT TAAAGTGCGC
CAAGTGTTAC GTAAAAAAAT GTCTCAGGCT GGTATCAGTA AGATACTTAT TGAGCGTCCT
TCTAATACTG CTTGTGTTAG CATGCATGTT GCTCGCCCTG GTGTAGTTAT TGGTAAGCGT
GGTGAAGATA TTGAAATGTT GAGAAAACAA GTCAGTGATA TTATGGGCGT TCCCGTCCAT
ATCAATGTCA TTGAAGTACG TAAACCTGAG CTTGATGCAC AGTTGGTCGC TGAATCGGTC
GCTCAACAGT TAGAACGTAG GATTATGTTT CGTCGTGCTA TGAAGCGTTC GGTTAGCAAT
GCGATACGCT TGGGTGCTTT AGGGATAAAA ATTAGTGTTG CTGGACGTCT TAATGGCGCT
GAGATTGCTC GATCTGAATG GTACCGTGAA GGTCGTGTCC CATTGCAAAC TTTGCGTGCC
GATATAGGTT ATGGTTTTTC TGAAGCGTAT ACGAACTATG GTGTTACTGG CGTCAAGGTT
TTGATGTATC ATGGAGATAT TTTCAGTTTT TCTAGTGTGA GTCAGGAAAA GCAGGATGAT
GGTTCGCGCG GTGATCGTAA TGCTGACCGT TCATCTCGTC GTTCCCGTGA GGTGAGGTGA
|
|---|
| Protein sequence | MGHKVHPIGI RLGISADWNS KWYANKAEFA RYLAADLKVR QVLRKKMSQA GISKILIERP
SNTACVSMHV ARPGVVIGKR GEDIEMLRKQ VSDIMGVPVH INVIEVRKPE LDAQLVAESV
AQQLERRIMF RRAMKRSVSN AIRLGALGIK ISVAGRLNGA EIARSEWYRE GRVPLQTLRA
DIGYGFSEAY TNYGVTGVKV LMYHGDIFSF SSVSQEKQDD GSRGDRNADR SSRRSREVR
|
|---|
| |