Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | XfasM23_0390 |
Symbol | |
ID | 6202622 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Xylella fastidiosa M23 |
Kingdom | Bacteria |
Replicon accession | NC_010577 |
Strand | + |
Start bp | 480120 |
End bp | 482891 |
Gene Length | 2772 bp |
Protein Length | 923 aa |
Translation table | 11 |
GC content | 53% |
IMG OID | 641701924 |
Product | DNA polymerase I |
Protein accession | YP_001829112 |
Protein GI | 182680952 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0258] 5'-3' exonuclease (including N-terminal domain of PolI) [COG0749] DNA polymerase I - 3'-5' exonuclease and polymerase domains |
TIGRFAM ID | [TIGR00593] DNA polymerase I |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGAGTAAAT TAGTTTTAAT TGATGGGTCC AGTTACCTTT ATCGTGCGTT TCACGCATTG CCGCCGCTCA GTAATGCAGC AGGTGAACCT ACCGGTGCGT TGTTCGGTGT GGTCAACATG TTGCGTACTA CATTGAAGGA GCGCCCGGAC TATGCTGCTT TCGTGATTGA TGCTCCAGGA AAGACGTTTC GCGATGCTCT TGATTCCGAA TACAAAATGC ATCGTCCGCC TATGCCTGAT GATTTGCGTA TGCAGGTGGA GCCGATGCGT GGGATTGTGC ATGCGTTAGG TATCGATATT TTGTGTATCG ATGGGGTGGA GGCTGATGAT GTGATCGGCA CATTAGCTTT AGCTGCCGTT GCTGATGGGA TTGCGGTGAC AATTTCTACG GGTGATAAGG ACTTCGCTCA GTTGGTGCGT CCAGGTGTGG AGTTGGTCAA CACAATGACT GGTAGTCGGA TGGACTCGGC TATGGCAGTG ATCAATAAAT TCGGCGTTGC TCCGGATCAG ATTATTGATT TTTTGGCGTT GATGGGTGAT TCGGTGGATA ACGTGCCTGG TGTGGATAAA TGCGGGCCGA AGACAGCAGC GAAGTGGTTG GCTGAGTATG GTTCACTGGA TGCGGTGATT GCCAATGCGG ACAAGATCAA GGGGAAAATT GGTGACAATC TGCGTGTTGT GCTGCCACGA CTTTTGTTAA ATCGTGCGCT GATTACAATC AAGACTGATG TGGTATTGGA GAAGCGCCCG CAGGATTTGG CGCTGCGTGA GCGTGATACT GAAGCGCTGC GTGATTTTTA TCAGCGGTAT GGCTTCACAC AGGCATTGAA GGAACTCGAT GGTGGTAGCG TTGCAGTCAC TGTGGCTGAG CAGGAACCTG GGCGTGGGCG AAATGCGGGT TTCCATGTTG CTCCTGATGC ATCGGTGGCA ATGGAGATTA ATCCGGCGTT GTCTGCGTCC GGAGAGTACG AGACGATTTT CACAATTGAG CAGTTGCAGG ATTGGATTGT GCGGTTGCGG GTGGCAGGTC AGTTTGCTTT GGACACTGAA ACTGACAGTC TGGATCCAAT GCAAGCGGTG CTCATTGGCC TGAGTTTTGC GTCAGAAGTA GGATGTGCTG CTTATTTGCC ATTTGGTCAT GATTACCCTG GTGCGCCGGT GCAGCTTGAT CGCGGGCAGG CGCTGGCATT ACTGCAACCG CTGCTGGAAG ATGCTGCGGT GCGTAAGGTG GGTCAGCATG GCAAATATGA TATGCATGTG CTGCGTCGTT ACGGTATCGT GCTCGCTGGT TATGCCGATG ACACTCTATT AGAAAGTTTT GTACTTACTT CCGGTCATGC GCGTCACGAT ATGGATACGT TGGCCAGGCG CCACCTCGGT TACGAGACGA TGAAGTATGT TGATCTGGTG GGTAAGGGAG CTAAGCAGAT TCCTTTTTCG CATGTGGGGG TTCAGGAGGC CACTCAGTAC GCTGCTGAGG ATGCGGATAT CACGTTGCGC TTGCACTGTG TGCTGGCGCC CAAGTTGTTG GCCGAGCCAC GTTTGGAGCG GGTCTACCGT GAAATCGAAA TGCCACTGGT TGCAGTGTTG GAGCGCATTG AGGCCAATGG TGTGCAGATT GATGCAGAGG AGTTGTATAA GCAGAGTGCT GATTTGTCGC GGCGGATGGT TATTGCGCAG CAAAAGGCGA TGGACTTGGC AGGGCGTCAC TTCAACTTGG ATTCACCGAA ACAGTTACAG GTGCTGTTGT TTGATGAGCT GAAGTTGCCA GTCGTGGTGA AGACGCCCAA GGGGCAGCCA TCGACTAATG AGGAGGCGTT GGAGGCGATT GTTGATCAGC ATGCGTTGCC GCGTGTCATT CTGGAATATC GCAGCTTGGC CAAGCTGCGC AATACCTACA CTGAGAAGTT GCCGGAGATG ATCCATCCGC ACACTGGGCG TGTGCATACC AATTACCATC AGGCCGGTGC TGCTACTGGG AGGTTGTCTT CCTCAGATCC CAATTTGCAG AATATCCCGA TTCGTACAGA TGATGGTCGC CGTATCCGTC GTGCTTTTGT GGCGCCTTCT GGGCGCAAGT TGATTGCTTG CGATTATTCG CAGATCGAGT TGAGGATCAT GGCGCATCTT TCAGGTGATG CGGGGCTTGT TGATGCGTTT GAGTCTGGTG TGGATGTGCA TTGTGCTATC GCTGCGGAGG TGTTCGGTCG TGGAATTGAT GAGGTGACGC CGAATGAGCG TCGTGCGGCG AAGGCAATCA ATTTTGGCTT GATCTACGGG ATGAGTGCGT TTGGCTTGGC GCGTCAGCTT GGTATCAGCC GCGGTGAGGC GCAGGATTAC ATTGCCTTGT ATTTCGATCG TTTTGCTGGG GTGCGTGATT TTATGGAAAA CACGCGTCAG CAGGCGCGTG ATAGAGGGTA TGTAGAAACG GTGTTTGGAC GCCGTCTGTA TTTGAACTCC ATTGCCAGCG GTAACCAGAC GCAGCGTGCC GGTGCTGAGC GTGCAGCGAT CAATGCGCCA ATGCAGGGGA CTGCGGCCGA TATCATCAAG CGTGCCATGG TTGCAGTGGA TGGTTGGTTG GGAGTGGGAG GGCATCGGGA GCGTGCACTG ATGATCTTGC AAGTACACGA TGAATTAGTG TTTGAGGCGG ATGAGGGTTT CGTGCCGACG CTTGTACATG AAGTGTCGGC ACGAATGGCT GCGGCAGCGC AGTTGCGTGT GCCGTTGGTT GTCGATGTTG GCGTAGGTCA TCACTGGGAT GAGGCGCACT GA
|
Protein sequence | MSKLVLIDGS SYLYRAFHAL PPLSNAAGEP TGALFGVVNM LRTTLKERPD YAAFVIDAPG KTFRDALDSE YKMHRPPMPD DLRMQVEPMR GIVHALGIDI LCIDGVEADD VIGTLALAAV ADGIAVTIST GDKDFAQLVR PGVELVNTMT GSRMDSAMAV INKFGVAPDQ IIDFLALMGD SVDNVPGVDK CGPKTAAKWL AEYGSLDAVI ANADKIKGKI GDNLRVVLPR LLLNRALITI KTDVVLEKRP QDLALRERDT EALRDFYQRY GFTQALKELD GGSVAVTVAE QEPGRGRNAG FHVAPDASVA MEINPALSAS GEYETIFTIE QLQDWIVRLR VAGQFALDTE TDSLDPMQAV LIGLSFASEV GCAAYLPFGH DYPGAPVQLD RGQALALLQP LLEDAAVRKV GQHGKYDMHV LRRYGIVLAG YADDTLLESF VLTSGHARHD MDTLARRHLG YETMKYVDLV GKGAKQIPFS HVGVQEATQY AAEDADITLR LHCVLAPKLL AEPRLERVYR EIEMPLVAVL ERIEANGVQI DAEELYKQSA DLSRRMVIAQ QKAMDLAGRH FNLDSPKQLQ VLLFDELKLP VVVKTPKGQP STNEEALEAI VDQHALPRVI LEYRSLAKLR NTYTEKLPEM IHPHTGRVHT NYHQAGAATG RLSSSDPNLQ NIPIRTDDGR RIRRAFVAPS GRKLIACDYS QIELRIMAHL SGDAGLVDAF ESGVDVHCAI AAEVFGRGID EVTPNERRAA KAINFGLIYG MSAFGLARQL GISRGEAQDY IALYFDRFAG VRDFMENTRQ QARDRGYVET VFGRRLYLNS IASGNQTQRA GAERAAINAP MQGTAADIIK RAMVAVDGWL GVGGHRERAL MILQVHDELV FEADEGFVPT LVHEVSARMA AAAQLRVPLV VDVGVGHHWD EAH
|
| |