| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | XfasM23_0299 |
|---|
| Symbol | |
|---|
| ID | 6204081 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Xylella fastidiosa M23 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010577 |
|---|
| Strand | + |
|---|
| Start bp | 380801 |
|---|
| End bp | 385624 |
|---|
| Gene Length | 4824 bp |
|---|
| Protein Length | 1607 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 641701831 |
|---|
| Product | hemolysin-type calcium binding domain-containing protein |
|---|
| Protein accession | YP_001829022 |
|---|
| Protein GI | 182680862 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG2931] RTX toxins and related Ca2+-binding proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCATTGA CTGCAGAACA AGCTAACGCA TTACTGGGCA GCATCACCAC CAGGGAGCAG
TTGCGCGATT TAATTAATCA ACTTGATATT CATAGCAGCG GCAGTATCAC GGTTTTATAT
AGCGGTTATA CGGCCAATGG ACTCGATAAC TCTCAGATTA TTCAGGGGAT GCTGCATAAT
GGCGACGATA TTCGGGTGAT TGATACCACT GAGGCCGCCA GGTTTCTGAA TGTCGATCCG
ACTACTCCTA ATTGGAATAA ACCACTTTAT CAAAAACTAG AACAAATTAT CGGCGGTAAA
CCTGATAAGT GGGGTACCCC CGCCAACCAA TTCCTGTTTG GCGAAAAAGC CGCCGATGGC
ACACGTCTTC CGAATGGGGC TTGGGACACG ATCTCCGCCC GCTTTGTGAA TGAGACGGTG
GGTGAGGTGC GCACCCTGAC CGGCGGTGCC TCGGTGAATG GGGTGTTTAA TCAAACCGAA
CTGCCGCGCC TGCTGAACAA CCCCAATATC ACCTCGGTGG ATGGGTTGCC TATCGCTGAT
TTGCGGCGCT TGGGGGCGGT GGGGTCCTTC CAGGCGATTT CAGCACAATC AGAGCATCTC
TCTGGCTACT TAAAGCTGGC CATCAATGCG GATGGCTCCA TCATGAAATT ATCCGGTGGT
ATCCCCAGCG TGGACAGCCA GCAGTACTTT GCGCTGACCG GTTTGGAAGG CAAGCCGCCG
CTTGGGGATG CGGGACGTTA TGACAACCTC GCCCGATACA TCCCCGCGCG CTTGGACACT
CACCTGGAGG GCGCACGTCT GGTGCAGGAC ATCAAAGACG GGTATCAGCG TACCACGCAG
TTGTTGGGGC CGGAGTCTGC TGCGGCACGT GCTGATGCGT TGCGGGTGCT GGGCAAACTC
GGTGTGGCTG CCGATCTGCT GTCGCTGGCG GTGATGGCGC ACGATGCCAA TGCGGCGTAC
GCCAGTGGCA ATATCGAGGG CAGCCGGCAG ATTGTCCAGG ATTGGACCAG TCAGTATCTG
GGTGGCTTGA TGGGTGGTTT GGCGGAGGCC AAAGCGGTTG GGCTGCTGTT GACTCCGGTA
TATCTGGATG GCCCGATTGG GGCGGCTGTT GCTTCGGTGT TGACGGTGGC GGCCGGTGTG
GAAGGCACGT TCTTAGGCAG TCATTACATT GGCGCTTTTC TGGATAAGGT GTTTGACCAG
TTGCACCACA TCGGGGAGTT GTCAGGGGCG AGGTTGTATG ACTGGGTCAC TCAGATAGGC
GATCTATTCA GACGCCTGAA TCAGACATTG CACACAGACA ACGCCTCCCT GCTAGATCTG
CTGCATGACC TGTTTCGTCA TAGCCGTGAT GTACGCGACC CGCTGGTGCT GGACCTGGAC
GGCGACGGCA TCACCCACGC CAGCGGCTGG GTGAAGTCCG ATGACGGCTT GCTGGTCCTG
GACCGCAACG GCAACGGGCG TATTGATAAC GGCAGCGAAC TGTTCGGCGC CGATACCGTG
CTCAGCAACG GTCACACCGC CGCCTCTGGC TTTGACGCCC TGCGTGATTT AGATAGCAAC
GGTGATGGCC TCTTCAGTGC TGCCGACGCC CGCTTTACGG ACGTGCGCGT CTGGCGCGAT
CTCAACCAAG ATGGCCAGTC CCAGGCCAAC GAACTGTTCA CCCTCTCCAC CCTGGGCATT
GCCTCCATCA CCCTCACGCC TACGGACACC CAACGCGTGA ACCTGGGCAA CGGTAACGTG
ATGGATGCCC GCGGCAGCTA CACCCGTACC GATGGCCGCA GCGGCACCGT TGGCAATCTG
CAATTAGGTG TGGACCAGTT CTACCGCGAT TACCGCGGCG CCCACGACAA GGTGACCATC
AATGACGCGG CCCGCGCCTT GCCAGCCATC AGCGGCAGCG GCGCAGTGCG CGATCTGCAA
GAAGCCGCCA GCCTCTCACC TGCCTTATTG GTGGCGGTGC AGGCGCTGCT CTCTGGCACC
ACCCAGGGCA CACTGCGTGC GGCGCTGGAT CAGGTGATCG CCCTGTGGGC CAGCACCTCA
ACCATGCTGA GCACTGAGGA ACGCCTGAAA GCCTCCGCAG ATGTGGAGCG CACGGTGTAT
TACCAGGGGT TCGTCCCTCC TGAGGTGACC GCCCAGGGGA AGGAGGCCGT TCTGGCCTTC
CAACAGCAGC AGCGTACCCG GCTTGGGCCG ATGATCGGCA TTTTGGAAAA GTTCAACGGC
TCTAGACTGA TTAGCGATCA AAACGACCAC ATACTGGGAG CACCGATCCT CAGCTGGAAC
CGCGTTGTCC ATCCGGATGG ACACAAAGAA GATGTCATCA CCATCACGCT CATCCCTGAG
CAACTCTACT CTGGGTTCGA TCCCCTTACG GATGCCTACG CCAAGCTCAA AGAATCCATC
TATATCCGCC TGGTGCTGGA GCCACGGCTC AATGATTACC TGTCCGGACT CACCCTGACG
TACAACAACG GCGTGATGGG ATGGGATGCC TCCGGCCTGG AGGCCAAGTT AGATCAGACC
TGGCAGCACA ACAAAGCTCA GGCGCTACAA GATGTGATGG ACTTACAGCG CTACGGCCGT
GACGCCCTGG CCCCCAGCGG TTGGAATCCC CTGGATGCCT TATGCCAGAT GGTCTATCGG
ACTGCGGCAA CGCCCGATGG AAGGCAGGCG CTGGCCGATG CGGGCATTCC CCTGATTGCC
GGAAATGCCG AGGGCAGTGC CGCCATGGAT CTGCTGTTTG GCGATGCGGG CGCCAATCTC
CTGCGGGGCG GTGGCGGTGA TGATGTGCTC TCCGGTGGTG ATGGTGATGA CGTGCTGGAT
GGTGGCGAAG GCAGCAATCG CCTGGAGGGC GGCGCCGGTC ACGATGTACT GAACGTGGCG
AATGGCTGGA ATAACGTGCT GAACGGCGGC AGCGGCGATG ACCTGTTGTA TGGCAGTTTC
TTTGCAGACA CATATCTGTT CAACAAAGGA GACGGCCACG ACACGCTCAT TGAGCAAGGC
GGTGCTGACA AACTCGTCTT TGGTGTGGGC ATTGTTGCTA ACCAGGTGCG GCTGCTGCGC
GAAGGGCAAG ATGTGGTGTT GGATTTGGGC AACGGTCAGG ACAGTATCCG TTTGAAGGAC
TGGTTGACTT TCTATGGCGC CCGCAACCAT AGCGCCGATA TTGAGCAGAT CGTCTTTGCC
GACGGCACGG TATGGACTGG GGAGACCTTG AGCACGCTGG GCCTCACCAC GCTGGGCACC
TCGGGCAATG ACATCCTCAA TGGCTGGCAA GGCAATGATC TGCTGCTGGG CGGGGATGGC
GATGACGTGC TAGACGGGGG CGAAGGCAGC AACCGTCTGG AGGGCGGCGC CGGTCACGAT
GTACTGAACG TGGCGAATGG CTGGAATAAC GTGCTGAACG GCGGCAGCGG CGATGACCTG
TTGTATGGCA GTTTCTTTGC AGACACCTAT CTGTTCAACA AAGGAGACGG CCGCGACACG
CTCATTGAGC AAGGCGGTGC TGACAAGCTC GTCTTTGGTG CGGGGATTAT TGCTAGCCAG
GTGCGGCTGC TGCACGAAGG GCAAGATGTG GTGTTGGACC TGGGCAACGG CCACGACAGT
ATCCGCATGA AGGATTGGCT GACCTCTGAT GGCGAATACA ATCGCACCGG CAACATTGAA
GAAATCCTTT TTGCTGACGG CACGAGGTGG ACAGGGGATA CGTTGGGTTG GAGGGAGATG
ACGACGTTCG GTACTTCTGG TAATGACACT CTGCAGGGCT GGGGAAGCTC GGATATTCTG
CTAGGTGGCA ATGGGGATGA TGTGCTGTCC GGGGATTATG GAGACGACAC GCTTTATGGA
GAAGCAGGAG ACGATCTGCT GTTAGGTGAT AATGGAAACG ACGTGCTGGA CGGTGGGGAA
GGCCACAACC GCCTGGAGGG CGGCGCCGGG AAGGATGTGC TGAAGGTGTC TACGGATGGC
TCCTCGGACA ACGTATTCAG CGGGGGTACC GGTGATGACA TGTTGTACGG GAGTGTGCAT
TCGGATACGT ATCTGTTCAA CCGGGGAGAT GGTCGCGACA CCATTGTGGA ACAGGGTGGT
TTCGACAAGA TCGTGTTTGG TGAGGAGATT GCCGTCAGTG ATATACACGT GCTGCGTGAA
GGTCAGGATG TTGTGCTGGA TCTGTATAAC GGATACGACA GCATCCGTTT AAAGGATTGG
TTGACGTCCG ATGGTACCCG CAACAGTAAC GCCGACATTG AACAGATCGT GTTTGCCGAT
GGCACGGTAT GGAGCGGAGA GACATTGAGC AGCATAGGTC TGAAGACGCT AGGAAGCGCA
GACAATGACA CGCTGAACGG CTGGAACGGC CGGAACATCC TGGTTGGAGA GGATGGCGAT
GACGTGTTGA AGGTATCTAT GTTTGACTCT TCGGATAACG TATTGGTCGG CTGCAGGGGC
AACGATATGC TCTACGGCAG CAGCAATTCA GACACCTACT TTTTCGATCA GGGAGACGGT
CACGACACCA TCATTGAGCA AGGCGGTGCT GACACGCTCG AGTTTGGTGA GGGGTTGCAT
CGGGAGGAGG CGTGTTTTAC GCGCTCAGGT GATGATCTGT CTATCCTGTT CAATGGCAGT
GAGGATCAGG TGACTGTGGC GGGTTGGTTC AGTGAGGCGG CGCATCAGGT GGAATCGTTG
GTGTTCCAGG ATGGGACGGT GCTGTCCGGT GAGGTGGAGC GTTTGATTGA GGCGATGGCG
CTGTCCCCTA CGGTGACGAC GATGCAAGCC AGTGTGCGTG ATATCAAGGA GTCGCCCAGG
TTGGTCGCCA GTTCGATTGT GTGA
|
|---|
| Protein sequence | MSLTAEQANA LLGSITTREQ LRDLINQLDI HSSGSITVLY SGYTANGLDN SQIIQGMLHN
GDDIRVIDTT EAARFLNVDP TTPNWNKPLY QKLEQIIGGK PDKWGTPANQ FLFGEKAADG
TRLPNGAWDT ISARFVNETV GEVRTLTGGA SVNGVFNQTE LPRLLNNPNI TSVDGLPIAD
LRRLGAVGSF QAISAQSEHL SGYLKLAINA DGSIMKLSGG IPSVDSQQYF ALTGLEGKPP
LGDAGRYDNL ARYIPARLDT HLEGARLVQD IKDGYQRTTQ LLGPESAAAR ADALRVLGKL
GVAADLLSLA VMAHDANAAY ASGNIEGSRQ IVQDWTSQYL GGLMGGLAEA KAVGLLLTPV
YLDGPIGAAV ASVLTVAAGV EGTFLGSHYI GAFLDKVFDQ LHHIGELSGA RLYDWVTQIG
DLFRRLNQTL HTDNASLLDL LHDLFRHSRD VRDPLVLDLD GDGITHASGW VKSDDGLLVL
DRNGNGRIDN GSELFGADTV LSNGHTAASG FDALRDLDSN GDGLFSAADA RFTDVRVWRD
LNQDGQSQAN ELFTLSTLGI ASITLTPTDT QRVNLGNGNV MDARGSYTRT DGRSGTVGNL
QLGVDQFYRD YRGAHDKVTI NDAARALPAI SGSGAVRDLQ EAASLSPALL VAVQALLSGT
TQGTLRAALD QVIALWASTS TMLSTEERLK ASADVERTVY YQGFVPPEVT AQGKEAVLAF
QQQQRTRLGP MIGILEKFNG SRLISDQNDH ILGAPILSWN RVVHPDGHKE DVITITLIPE
QLYSGFDPLT DAYAKLKESI YIRLVLEPRL NDYLSGLTLT YNNGVMGWDA SGLEAKLDQT
WQHNKAQALQ DVMDLQRYGR DALAPSGWNP LDALCQMVYR TAATPDGRQA LADAGIPLIA
GNAEGSAAMD LLFGDAGANL LRGGGGDDVL SGGDGDDVLD GGEGSNRLEG GAGHDVLNVA
NGWNNVLNGG SGDDLLYGSF FADTYLFNKG DGHDTLIEQG GADKLVFGVG IVANQVRLLR
EGQDVVLDLG NGQDSIRLKD WLTFYGARNH SADIEQIVFA DGTVWTGETL STLGLTTLGT
SGNDILNGWQ GNDLLLGGDG DDVLDGGEGS NRLEGGAGHD VLNVANGWNN VLNGGSGDDL
LYGSFFADTY LFNKGDGRDT LIEQGGADKL VFGAGIIASQ VRLLHEGQDV VLDLGNGHDS
IRMKDWLTSD GEYNRTGNIE EILFADGTRW TGDTLGWREM TTFGTSGNDT LQGWGSSDIL
LGGNGDDVLS GDYGDDTLYG EAGDDLLLGD NGNDVLDGGE GHNRLEGGAG KDVLKVSTDG
SSDNVFSGGT GDDMLYGSVH SDTYLFNRGD GRDTIVEQGG FDKIVFGEEI AVSDIHVLRE
GQDVVLDLYN GYDSIRLKDW LTSDGTRNSN ADIEQIVFAD GTVWSGETLS SIGLKTLGSA
DNDTLNGWNG RNILVGEDGD DVLKVSMFDS SDNVLVGCRG NDMLYGSSNS DTYFFDQGDG
HDTIIEQGGA DTLEFGEGLH REEACFTRSG DDLSILFNGS EDQVTVAGWF SEAAHQVESL
VFQDGTVLSG EVERLIEAMA LSPTVTTMQA SVRDIKESPR LVASSIV
|
|---|
| |