Gene XfasM23_0169 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagXfasM23_0169 
SymbolsecD 
ID6204035 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameXylella fastidiosa M23 
KingdomBacteria 
Replicon accessionNC_010577 
Strand
Start bp231693 
End bp233537 
Gene Length1845 bp 
Protein Length614 aa 
Translation table11 
GC content51% 
IMG OID641701705 
Productpreprotein translocase subunit SecD 
Protein accessionYP_001828900 
Protein GI182680740 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG0342] Preprotein translocase subunit SecD 
TIGRFAM ID[TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR01129] protein-export membrane protein SecD 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCTTGAAT TACCCCGTTG GAAATATGTT CTTATTTTTG TTGTGCTTGT GTTGAGCACG 
CTGTACGCGT TACCAAACGT GTATCAGAAA GATCCTTCCG TGCAGATTAC CGCCAATCGA
GGCGGCCATA TCGACGATGC ATTCCGCCAG CAGGTGATGA CTGATCTTCA AGCATCCGGC
ATTGTGCCTA AGGCCGTGAC CAAGGAGGGG GAGAGCCTGA TGGTGCGCTT GATGTCGTTG
GAGATGCAGA CCCGTGCCAG CGATGTGTTG CGGGCTAAGG TGGGTGAGAA TTACACCGTT
GCATTGAATC TCGCTTCCAC TGTGCCAGAT TGGTTGGCTA AGTTGGGTGG GCGACCGATG
GTGTTAGGTT TGGATCTGGT TGGCGGTGTG CATTTCGCGC TTCAGGTGGA TCAGAAGGCC
GCTCTGAATA AACGTATGGA TGCTTTTGTT GAGGAGGTAC GTTCGACGTT GGGTAGCAAG
CGTATTGGCT TCCGCATGGT CGAACGCCGT CCGGACAACA CGATTCGAGT GACGTTTGAT
GATGATGCTC ATCTCAATGA AGCACGTATG GTGTTGTTTA AGGAGCAAGT GGGGCTGAGT
TATTCGGTAT CCGGAAATAC TTTGATTGCT CGTGTTTCTG AGAATGAGTT GCGTCAGATT
GCCAGTGGTG CGGTTGAGCA AAATTTGACG ACTCTGCGTA ATCGCATCAA TGAATTAGGC
GTGGCCGAAC CAATTATCCA ACGTCAGGGG GATGATCGTA TTGTTGTTGA GTTGCCTGGT
GTTCAGGATA CTGCTGAGGC TAAACGTCTG ATAGGTGCGA CTGCTACGCT GGAGTTTCGG
GGTGTGGTCG ACGGTGATGC CTATGAGGCA GTCCGTACTG GGAATGTTCC TCCTGAGGCC
AGGGTGTATT ACATACGCGG CACCAACCAG CCAGTTTTAT TGAATAAGCG TGTGATTGTT
TCTGGTGATG AGATGGTGAA TGCCACTGTC GGTGTGGATG AGAACGGCAT GCCAGCGGTC
AATGTCACCC TCAGTAATGC TGCTGGTCAG CGTATGTTGG ACTACACCCA GCGCAACCTT
TACAAGCTGA TGTCTGTGGT CTACATCGAG CGTATTCCGA CTGTGAGCAT GGTTGATGGT
AAGGAAGTGC GTGGCGTGCG GTTGAAGGAA GAGGCATTGT CCCCAACACG GATTGCTGGG
GTATTTGGAA AAAACTTCCG TACCACCGGG TTGGAGAAGA CTGAGGCTGA AAATCTGTCT
AAATTGTTGC GCGCTGGTTC GTTGGCTGCA CCGATGGATT TCGTTGAGGA ATATGTGATC
GGTCCTAGTT TGGGTGCAGA GAATGTAGAA CGTGGTGTGA CTGCAGTGGT GTTTTCTTTC
TTATTCACCC TGGTGTTTTT CACCATCTAT TACCGCATGT TTGGTGTGAT TACTTCATTG
GCATTGCTGT TTAATCTGTT GATTGTGGTA GCTGTGATGT CGCTGTTTGG TGCAACCATG
ACTTTGCCGG GTTTTGCCGG GTTGGCGCTG TCGGTCGGGC TTTCGGTGGA TGCTAACGTG
TTGATCAACG AGCGTATCCG TGAGGAGTTG CGTCACGGGA TGCCTCCGAG ATCGGCGATT
GTGGCCGGTT ACGACAAGGC GGGTAGCACG ATTCTTGATG CCAATTTGAC CGGACTGATT
GTTGGTGTTG CCTTGTATGC TTTCGGAACC GGTCCTTTGA AGGGCTTTGC GTTGACTATG
ATTATCGGGA TTTTCGCCTC AATGTTTACT GCGATTACGG TATCGCGTTC GCTCTCTGCG
CTGATTTACG GTACGCGCAA CAATCTCAAG TCTTTGGCTA TCTGA
 
Protein sequence
MLELPRWKYV LIFVVLVLST LYALPNVYQK DPSVQITANR GGHIDDAFRQ QVMTDLQASG 
IVPKAVTKEG ESLMVRLMSL EMQTRASDVL RAKVGENYTV ALNLASTVPD WLAKLGGRPM
VLGLDLVGGV HFALQVDQKA ALNKRMDAFV EEVRSTLGSK RIGFRMVERR PDNTIRVTFD
DDAHLNEARM VLFKEQVGLS YSVSGNTLIA RVSENELRQI ASGAVEQNLT TLRNRINELG
VAEPIIQRQG DDRIVVELPG VQDTAEAKRL IGATATLEFR GVVDGDAYEA VRTGNVPPEA
RVYYIRGTNQ PVLLNKRVIV SGDEMVNATV GVDENGMPAV NVTLSNAAGQ RMLDYTQRNL
YKLMSVVYIE RIPTVSMVDG KEVRGVRLKE EALSPTRIAG VFGKNFRTTG LEKTEAENLS
KLLRAGSLAA PMDFVEEYVI GPSLGAENVE RGVTAVVFSF LFTLVFFTIY YRMFGVITSL
ALLFNLLIVV AVMSLFGATM TLPGFAGLAL SVGLSVDANV LINERIREEL RHGMPPRSAI
VAGYDKAGST ILDANLTGLI VGVALYAFGT GPLKGFALTM IIGIFASMFT AITVSRSLSA
LIYGTRNNLK SLAI