Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | XfasM23_0169 |
Symbol | secD |
ID | 6204035 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Xylella fastidiosa M23 |
Kingdom | Bacteria |
Replicon accession | NC_010577 |
Strand | + |
Start bp | 231693 |
End bp | 233537 |
Gene Length | 1845 bp |
Protein Length | 614 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 641701705 |
Product | preprotein translocase subunit SecD |
Protein accession | YP_001828900 |
Protein GI | 182680740 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG0342] Preprotein translocase subunit SecD |
TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family [TIGR01129] protein-export membrane protein SecD |
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Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCTTGAAT TACCCCGTTG GAAATATGTT CTTATTTTTG TTGTGCTTGT GTTGAGCACG CTGTACGCGT TACCAAACGT GTATCAGAAA GATCCTTCCG TGCAGATTAC CGCCAATCGA GGCGGCCATA TCGACGATGC ATTCCGCCAG CAGGTGATGA CTGATCTTCA AGCATCCGGC ATTGTGCCTA AGGCCGTGAC CAAGGAGGGG GAGAGCCTGA TGGTGCGCTT GATGTCGTTG GAGATGCAGA CCCGTGCCAG CGATGTGTTG CGGGCTAAGG TGGGTGAGAA TTACACCGTT GCATTGAATC TCGCTTCCAC TGTGCCAGAT TGGTTGGCTA AGTTGGGTGG GCGACCGATG GTGTTAGGTT TGGATCTGGT TGGCGGTGTG CATTTCGCGC TTCAGGTGGA TCAGAAGGCC GCTCTGAATA AACGTATGGA TGCTTTTGTT GAGGAGGTAC GTTCGACGTT GGGTAGCAAG CGTATTGGCT TCCGCATGGT CGAACGCCGT CCGGACAACA CGATTCGAGT GACGTTTGAT GATGATGCTC ATCTCAATGA AGCACGTATG GTGTTGTTTA AGGAGCAAGT GGGGCTGAGT TATTCGGTAT CCGGAAATAC TTTGATTGCT CGTGTTTCTG AGAATGAGTT GCGTCAGATT GCCAGTGGTG CGGTTGAGCA AAATTTGACG ACTCTGCGTA ATCGCATCAA TGAATTAGGC GTGGCCGAAC CAATTATCCA ACGTCAGGGG GATGATCGTA TTGTTGTTGA GTTGCCTGGT GTTCAGGATA CTGCTGAGGC TAAACGTCTG ATAGGTGCGA CTGCTACGCT GGAGTTTCGG GGTGTGGTCG ACGGTGATGC CTATGAGGCA GTCCGTACTG GGAATGTTCC TCCTGAGGCC AGGGTGTATT ACATACGCGG CACCAACCAG CCAGTTTTAT TGAATAAGCG TGTGATTGTT TCTGGTGATG AGATGGTGAA TGCCACTGTC GGTGTGGATG AGAACGGCAT GCCAGCGGTC AATGTCACCC TCAGTAATGC TGCTGGTCAG CGTATGTTGG ACTACACCCA GCGCAACCTT TACAAGCTGA TGTCTGTGGT CTACATCGAG CGTATTCCGA CTGTGAGCAT GGTTGATGGT AAGGAAGTGC GTGGCGTGCG GTTGAAGGAA GAGGCATTGT CCCCAACACG GATTGCTGGG GTATTTGGAA AAAACTTCCG TACCACCGGG TTGGAGAAGA CTGAGGCTGA AAATCTGTCT AAATTGTTGC GCGCTGGTTC GTTGGCTGCA CCGATGGATT TCGTTGAGGA ATATGTGATC GGTCCTAGTT TGGGTGCAGA GAATGTAGAA CGTGGTGTGA CTGCAGTGGT GTTTTCTTTC TTATTCACCC TGGTGTTTTT CACCATCTAT TACCGCATGT TTGGTGTGAT TACTTCATTG GCATTGCTGT TTAATCTGTT GATTGTGGTA GCTGTGATGT CGCTGTTTGG TGCAACCATG ACTTTGCCGG GTTTTGCCGG GTTGGCGCTG TCGGTCGGGC TTTCGGTGGA TGCTAACGTG TTGATCAACG AGCGTATCCG TGAGGAGTTG CGTCACGGGA TGCCTCCGAG ATCGGCGATT GTGGCCGGTT ACGACAAGGC GGGTAGCACG ATTCTTGATG CCAATTTGAC CGGACTGATT GTTGGTGTTG CCTTGTATGC TTTCGGAACC GGTCCTTTGA AGGGCTTTGC GTTGACTATG ATTATCGGGA TTTTCGCCTC AATGTTTACT GCGATTACGG TATCGCGTTC GCTCTCTGCG CTGATTTACG GTACGCGCAA CAATCTCAAG TCTTTGGCTA TCTGA
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Protein sequence | MLELPRWKYV LIFVVLVLST LYALPNVYQK DPSVQITANR GGHIDDAFRQ QVMTDLQASG IVPKAVTKEG ESLMVRLMSL EMQTRASDVL RAKVGENYTV ALNLASTVPD WLAKLGGRPM VLGLDLVGGV HFALQVDQKA ALNKRMDAFV EEVRSTLGSK RIGFRMVERR PDNTIRVTFD DDAHLNEARM VLFKEQVGLS YSVSGNTLIA RVSENELRQI ASGAVEQNLT TLRNRINELG VAEPIIQRQG DDRIVVELPG VQDTAEAKRL IGATATLEFR GVVDGDAYEA VRTGNVPPEA RVYYIRGTNQ PVLLNKRVIV SGDEMVNATV GVDENGMPAV NVTLSNAAGQ RMLDYTQRNL YKLMSVVYIE RIPTVSMVDG KEVRGVRLKE EALSPTRIAG VFGKNFRTTG LEKTEAENLS KLLRAGSLAA PMDFVEEYVI GPSLGAENVE RGVTAVVFSF LFTLVFFTIY YRMFGVITSL ALLFNLLIVV AVMSLFGATM TLPGFAGLAL SVGLSVDANV LINERIREEL RHGMPPRSAI VAGYDKAGST ILDANLTGLI VGVALYAFGT GPLKGFALTM IIGIFASMFT AITVSRSLSA LIYGTRNNLK SLAI
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