| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | XfasM23_0031 |
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| Symbol | |
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| ID | 6201943 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Xylella fastidiosa M23 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010577 |
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| Strand | + |
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| Start bp | 39714 |
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| End bp | 43301 |
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| Gene Length | 3588 bp |
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| Protein Length | 1195 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 641701555 |
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| Product | transcription-repair coupling factor |
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| Protein accession | YP_001828763 |
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| Protein GI | 182680603 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
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| TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCACCAT CCTCCTTTCC CTCTCCGCTG CTGCCCCGTG CCGGGCAGCT CCGTGCATTT
TGGCGTGCTC CGGTCTCTCC AACGGCGCTT GCTTGGCATA TCGCTTGTGC TGCTCAGGCA
CACAGGGGAC CATTGCTGTT GGTCACGCAT GACAATCACA GTGCGCACCA GATTGAGGTT
GACCTACAGA CTCTATTGGC GCATTGCTCA GGGTTGCCGG TCATTGGTTT CCCTGATTGG
GAGACGCTTC CTTACGACCA ATTCAGCCCT GATCCCAATA TTGTCAGCCA GCGTTTGGCG
ACGTTGCATC GGTTGCCTTC ATTAGCACGC GGTATTGTCG TCGTGCCGGT ACAGACGTTG
ATGCAGCAGT TGGCACCGTT GAGTTACATC GTTGGTGGCA GCTTTGATTT TAAGGTGGGG
CAACGCTTGA TTCTGGATGC TGAGAAGCAG CGGTTGGAGC GGGCGGGTTA CCGCAATGTG
CCGCAGGTGA TGGACCCCGG GGATTTTACG GTGCGCGGGG GGCTGCTTGA TGTTTATCCG
ATGGGTACGG ATGTACCGCT GCGAATCGAA CTATTGGATG AGGAGATTGA TTCAATCCGT
ACGTTCGATC CCGAATCGCA GCGTTCGTTA AATCAGGTCG ATGTCATTCA TATGCTGCCC
GGCCGCGAAG TACCGTTGGA TCCTGCGGTG CTTGAACGCG TTTTGGTGCG GTTGCGTGAG
CGTTTCGATC TGGATACTCG GCGCAGTGCG TTGTATCAGG ATTTGAAAGC CGGGTTAGCT
CCCTCAGGGA TCGAGTACTA TTTGCCGCTT TTTTTTGAGT CGGGGCGTGG TGGGAAACAC
GCGACCGCGA CGCTTTTTGA TTATTTGAGT GCAGATTTAT TGGTGTTAAC GGCACCAGGT
GTCTCTAACG CTGCCGATGC GTTCTGGGGG CAGACGATGC AACGTTATGA GCAACGTCGC
CACGATATTG AGCGCCCGTT GTTACCGCCG CAGGAGCTAT ACCAGTCCCC GGATGCGTTG
CGTGAACGCT TGAATCGTTT GCCGCGCATT GAGGTTTGGT CTGCCGAACA TGCGCATATC
GATAAAGCAG AAGTATTGGA TGAGCAGCCA TTGCCGGTGG CGACTAAGGA TGTTTCCGTT
GGACAGGCAT TGAGAACTTT CCTTGCTGAT TACGCTGGCC GTGTGTTGAT TGCTGCTACC
TCGCCTGGTC GTCGTGAGGT GCTGCTTGAA TTGTTGGCCA CCGCCGATCT GCAACCGGAG
GTATTGCCTG ACTTTAGGTC GTTTTTTCTC TCTGCGGCCG AAGTGAGTGA TTTGGGGGAA
GCCAATCGCG ATAGTGGCAA TGGCGTGTCA GGTTCGAATG ATGCGGATGC GGCTGCTTTT
CACGTCATTG CTTCGCAGGG TGGGTCCTTA CCAACGTTCG CGATTACTGT GGCTCCGTTG
GAGGATGGGT TTTCTCTCAG TGTGCCGCCT ATTGCGGTGC TTACCGAACG TCAATTGTTC
CCTGAGCGGG TGAATCCGGT GCGCCGCAGT CGGCGTGTTG GGCGTGAGCC TGAGGCAATT
ATTCGTGATC TGGGTGAGTT GTCCGAGGGT GCCCCTATCG TGCACGAGGA CCACGGGGTC
GGTCGTTACC GCAAACTGAT CACCATGAAC GTCAGTGGTA TGCCTGGTGA GTTTGTGGAG
ATCGAGTATG CAAAGGGGGA CCGTTTATAC GTTCCGGTTG CCCAATTGCA TCTGATTAGT
CGCTACTCAG GCGCTTCGCC GGAGACCGCG CCGCTGCACT CGTTGGGTGG CGAGCAATGG
AGCAAGGCCA AGCGCAAGGC GGCAGAAAAG GTACGCGATG TGGCTGCGGA GTTGTTGGAA
ATTCAGGCGC GGCGTCAGGC GCGTGCAGGC TTGGCTTTGC GCATTGATCG TACGATGTAT
GAACCTTTTG CAGCGGGTTT CCCATTCGAA GAGACTCCCG ATCAGCTTGC AGCGATTGAG
ACGACGCTGC GTGATCTGCA ATCCAGTCAG CCGATGGACC GGGTAGTGTG CGGTGATGTT
GGTTTTGGCA AAACGGAGGT GGCGGTGCGT GCTGCATTCG CTGCAGCCAG TGCAGGAAAA
CAGGTTGCGG TATTGGTGCC GACGACGTTG CTAGCCGAAC AGCACTATCG AAATTTCCGC
GATCGCTTTG CCGATTATCC GATTAGAGTC GAAGTGCTTT CGCGCTTCAA AAGCACTAAA
GAAATCAAGG CCGAGTTGCA GAAGGTCAGT GAAGGCACCA TGGATGTCAT TGTCGGCACG
CATCGGTTGT TGCAACCGGA CGTCAAGTTT AAAGACTTGG GTTTAGTCAT TGTCGACGAG
GAGCAGCGTT TCGGGGTGCG TCAGAAGGAG GCGCTGAAGT CGTTACGTGC GAATGTACAT
TTGTTGACGC TGACAGCTAC GCCCATCCCG CGCACGCTCA ATATGGCAAT GGCGGGGTTG
CGTGATTTGT CGATCATTGC GACACCACCG CTGAATCGGC TGGCGGTGCA GACGTTTATC
ACTCCTTGGG ATAATGCGCT GTTGCATGAG GCTTTCCAGC GTGAACTAGC GCGTGGTGGT
CAGTTGTACT TTCTACATAA CGATGTGGAG AGTATCGGCA GGATGCAGCG TGATCTGGCC
CAACTGGTGC CGGAAGCGCG TATTGGTATT GCCCACGGCC AGATGCCCGA ACGCGAGTTA
GAGCGCGTCA TGCTGGATTT CCAGAAGCAG CACTTCAACG TGTTGTTGTC TACGACGATT
ATCGAATCCG GTATTGATAT TCCCAACGCT AACACCATCA TCATCAACCG CGCTGACCGC
TTTGGTTTGG CGCAGTTGCA CCAGTTGCGT GGCCGTGTCG GTCGTTCTCA CCATCGCGCC
TATGCTTATT TGGTGGTTCC TGACCGGCGC AGCATGACGG CGGATGCAGA GAAACGCTTG
GAGGCGATTG CGTCAATGGA CGAGTTGGGT GCGGGCTTTA CTTTGGCGAC CCATGATCTG
GAAATACGTG GCGCTGGTGA GTTGCTCGGT GAAGATCAAA GCGGGCAGAT GGCCGAGGTC
GGTTTCAGCT TATATACCGA GTTGCTTGAG CGCGCGGTGC GCAGCATCAA GCAAGGTAAA
TTGCCAGACC TTGATGCAGG TCAGGAAGAA CGTGGCGCGG AGGTGGATTT GCACATACCC
ACGTTGATCC CAGAGGATTA TTTGCCCGAT GTGCATACCC GTTTGACACT CTACAAACGG
ATTTCCACGG CCCGTGACAG CAATGCGCTG CGTGAGTTGA ATGTGGAAAT GATTGACCGC
TTTGGTGTGC TTCCAGAGAC TGCTAAACAT CTTTTTGCAA TCGCTGAGTT GAAGTTGCAA
GCCACTGCAT TGGGTATTTC CAAGTTGGAA TTGGGGGAAA ATGGTGGCCG TATCATATTT
GGAGCCAAAC CCATCATTGA TCCTATGGCT GTGATCCAGC TCGTCCAAAA GCAATCCAAA
CTGTATTCGA TGGAGGGGCC AAGTAAATTA AAACTCAAGT TGCCTTTGCC GGAACCGGCC
GATCGTTTCA ACGCTGCACG AGGGTTGCTT GCTGCGTTGA CACCTTAA
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| Protein sequence | MSPSSFPSPL LPRAGQLRAF WRAPVSPTAL AWHIACAAQA HRGPLLLVTH DNHSAHQIEV
DLQTLLAHCS GLPVIGFPDW ETLPYDQFSP DPNIVSQRLA TLHRLPSLAR GIVVVPVQTL
MQQLAPLSYI VGGSFDFKVG QRLILDAEKQ RLERAGYRNV PQVMDPGDFT VRGGLLDVYP
MGTDVPLRIE LLDEEIDSIR TFDPESQRSL NQVDVIHMLP GREVPLDPAV LERVLVRLRE
RFDLDTRRSA LYQDLKAGLA PSGIEYYLPL FFESGRGGKH ATATLFDYLS ADLLVLTAPG
VSNAADAFWG QTMQRYEQRR HDIERPLLPP QELYQSPDAL RERLNRLPRI EVWSAEHAHI
DKAEVLDEQP LPVATKDVSV GQALRTFLAD YAGRVLIAAT SPGRREVLLE LLATADLQPE
VLPDFRSFFL SAAEVSDLGE ANRDSGNGVS GSNDADAAAF HVIASQGGSL PTFAITVAPL
EDGFSLSVPP IAVLTERQLF PERVNPVRRS RRVGREPEAI IRDLGELSEG APIVHEDHGV
GRYRKLITMN VSGMPGEFVE IEYAKGDRLY VPVAQLHLIS RYSGASPETA PLHSLGGEQW
SKAKRKAAEK VRDVAAELLE IQARRQARAG LALRIDRTMY EPFAAGFPFE ETPDQLAAIE
TTLRDLQSSQ PMDRVVCGDV GFGKTEVAVR AAFAAASAGK QVAVLVPTTL LAEQHYRNFR
DRFADYPIRV EVLSRFKSTK EIKAELQKVS EGTMDVIVGT HRLLQPDVKF KDLGLVIVDE
EQRFGVRQKE ALKSLRANVH LLTLTATPIP RTLNMAMAGL RDLSIIATPP LNRLAVQTFI
TPWDNALLHE AFQRELARGG QLYFLHNDVE SIGRMQRDLA QLVPEARIGI AHGQMPEREL
ERVMLDFQKQ HFNVLLSTTI IESGIDIPNA NTIIINRADR FGLAQLHQLR GRVGRSHHRA
YAYLVVPDRR SMTADAEKRL EAIASMDELG AGFTLATHDL EIRGAGELLG EDQSGQMAEV
GFSLYTELLE RAVRSIKQGK LPDLDAGQEE RGAEVDLHIP TLIPEDYLPD VHTRLTLYKR
ISTARDSNAL RELNVEMIDR FGVLPETAKH LFAIAELKLQ ATALGISKLE LGENGGRIIF
GAKPIIDPMA VIQLVQKQSK LYSMEGPSKL KLKLPLPEPA DRFNAARGLL AALTP
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