Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Oter_4627 |
Symbol | |
ID | 6205927 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Opitutus terrae PB90-1 |
Kingdom | Bacteria |
Replicon accession | NC_010571 |
Strand | + |
Start bp | 5943338 |
End bp | 5945953 |
Gene Length | 2616 bp |
Protein Length | 871 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 641694294 |
Product | RecD/TraA family helicase |
Protein accession | YP_001821497 |
Protein GI | 182416431 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0507] ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member |
TIGRFAM ID | [TIGR01448] helicase, putative, RecD/TraA family |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.0750551 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 23 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGGCGTCC CGCCCATGTC GAGTTACCGC GGGCATTTTT CCCCGTTCCG TTCACGGGCG AGACGCCCGT GCCACCGCCT TCGGCCGCGT TCCGCGCTTC CCTTCGGTGT GGCGCCCGGT ATTCCGTCAC TATCCGCCGT GGCTTCCTCT CCCGCAGCAA CTCTCACCGG CGTCGTCGAG CGCATTATCT TCCTCAACGA GGAGAATCAC TACACGATCG CGGAGTTCCG GCCGGACGCG GACAAAAAGT CCGTGCCGAA GGAACGCCCG GAACCGGTGA CGATCGTCGG TCCACTGCCG GGCGTCGAGT GCGGCGAAAC GCTGCATCTC ACCGGCGAGT GGACGCGCCA CGCGCAGCAC GGCGCGCAGT TCAAGGTCCT CGGCTTCAAG AGCGAGCTAC CGTCCAGCGT CTATGGCATC CGGAAATACC TCGGCAGCGG ACTCGTGCCC GGCATCGGCA AGGTCTACGC CAACAAGATC GTCGACGCGT TCGGCACCGA CACGTTTCGC ATCCTGAGCG AAGAGTCCGG CCGGCTGCGG GATGTCGACG GCATCGGCCG CAAACGCGCA ACCGCGATCA AGGCGGCGTG GGATGCGAAG CGGACCGAGC GCGAGCTCTA CATTTTTCTG CAGACCTACG GAGTGACGCC CGGCCAGTGC GTGAAGATCG CAAAGCACTT CGGCCCGTCC GCGAAAAACA TCCTCACGCA GGAACCGTAT CGCGCCGCTC GCGAGATCGA CGGCATCGGC TTCAAGACCG CCGACCGGAT CGCGATCAAT CTCGGCTTCG CCAACGACGC CGCGCCGCGG CTCGACGCCG GATTGATCTT CGCGCTCGAA ACACTGCAGG AGGAAGGCCA CACCGCATTC GGCGAATCGG ACCTTTGCGA CTACGCCGCG AATTTGTTGG AGACGGACTC GCGACTGATC TGCGCCCGGA TCGACGCTCT GGTCGAAGCA AAGCAACTCG TCCGCCATGG CGGCTCAGGT GTAGCCGGGG TCGTTGACCC CGGCCATGGA GACGTGACGC CCTCGTCGCG TCCCGCCCGC CGCGACGAGG GCGTCGCGGC TCCATCTGCT AGCGGCCGCG TCAGTGTCGC CGCGGTCGCC GACCGCGGCC CGGGCTCAAC GAGCCCGGCT ACACCCAACC GCACTTCTGG CTCTCAGCTC TCAGCTCTCA GCTCTAGACT CATTCAGCTC CCGCACAACG ATCGCGCCGA ACAGAAGATC GCCGAAGTCG TGCAGCGTCT GACGCGCGTT GCCAGCGGCC TGCCGCCGAT CAAGACCGAC GCGGCGGTCA CTTGGGCTGA GCAGAAAGCC GGCTTCACAT TCCACGAGCT GCAGCGCCGC GCCGTGCGCG CCGCGCTCAC GAGCAAGTTC AGCATTCTCA CCGGCGGACC CGGCACGGGC AAAACCACCA TCCTGCGCGC ACTCGTGGAA ATTCTGAAGG CGAAGAAAGT CCGCGTGCAC CTCGCGGCGC CCACGGGTCG CGCCGCGCAG CGACTCGCGG AAACCACGGG CGGCTACGCC TCGACCATCC ACCGGCTGCT CAAATGGGAT CCCGCCGCGG GCGGTTTCAT CGCGAACGAA AGCACGCCAC TTTCCACCGA TTTCCTGATC GTCGACGAAG CCTCGATGCT CGACACGCGG CTCGCTTCCG CGCTGTTACA GGCGGTGCCC GCGCGCGCGC ACCTGCTACT CGTCGGCGAC ATCGACCAAC TCCCAAGCGT CGGCGCCGGC AACGTGCTGA AGGACCTGAT CGTCGTGGCC GAAGGCTCCG CGCCGCATCC TCAACTCTCA ACCCTCAACT CTCAACCCGC GGCGCTCCGC GCCGCGATTC CCGTCACCCG GCTCTCCGTC GTCTATCGCC AGAAGGACCA CAGCGGCATC GTCAGCACGG CGCACGCGAT CAACTCCGGC GACGCCTCGC TGCCACCCGC GTTCGGCGAG ATCGCCGACG TCCCGCCGTG GAGCGATCTC GCGTTCATCA CCGCCGCCGA CGCGGAGGAC TGCCTCCGCA AAGTCATCCA GCTCTGCACC GAGTTCGTCC CCCAGAAACT CCACTGGCCG AATCCGATCG CCGACGTGCA GGTGCTCGCG CCGATGCACA AGGGCGTCGC CGGCGTCGCC AACCTTAACG TGCAGCTGCA GGCCGCGCTG AATCCGCACG CCCGCGGCCT GCGCGCCGCG ACCGGCGAAT ACCGACCGGC CGACAAGGTC ATTCAGCTCC GCAACAACTA CGACAAAAAC CTCTTCAACG GCGATATCGG TTCGGTCGTG TCGGTCGACG CCGAGCACGG CACAATGGTG GCGGAGTTCG ACGGCGAGCA ACACACGTTC GAACGCGGCG ACTTCAGCGA TCTCGCCCTC GCCTACACGA TCAGCATCCA TAAATCGCAA GGCAGCGAGT ATCCCGTCGT CGTGATCCCT CTGTTGAAGG GCCACTTCAT GATGCTGCAG CGGAATCTGA TCTACACGGC GATCACGCGG GGCCGCAAAA AGGTCTACCT CGTCGGTGAA CCCGCCGCGT ACGCCATGGC CGTCCGCAAC AGCGAATCGA AGCAACGGCT GACCCACCTG CGGGAGAAGA TCGTCGTGAG CAGCAGCCGC GCCTGA
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Protein sequence | MGVPPMSSYR GHFSPFRSRA RRPCHRLRPR SALPFGVAPG IPSLSAVASS PAATLTGVVE RIIFLNEENH YTIAEFRPDA DKKSVPKERP EPVTIVGPLP GVECGETLHL TGEWTRHAQH GAQFKVLGFK SELPSSVYGI RKYLGSGLVP GIGKVYANKI VDAFGTDTFR ILSEESGRLR DVDGIGRKRA TAIKAAWDAK RTERELYIFL QTYGVTPGQC VKIAKHFGPS AKNILTQEPY RAAREIDGIG FKTADRIAIN LGFANDAAPR LDAGLIFALE TLQEEGHTAF GESDLCDYAA NLLETDSRLI CARIDALVEA KQLVRHGGSG VAGVVDPGHG DVTPSSRPAR RDEGVAAPSA SGRVSVAAVA DRGPGSTSPA TPNRTSGSQL SALSSRLIQL PHNDRAEQKI AEVVQRLTRV ASGLPPIKTD AAVTWAEQKA GFTFHELQRR AVRAALTSKF SILTGGPGTG KTTILRALVE ILKAKKVRVH LAAPTGRAAQ RLAETTGGYA STIHRLLKWD PAAGGFIANE STPLSTDFLI VDEASMLDTR LASALLQAVP ARAHLLLVGD IDQLPSVGAG NVLKDLIVVA EGSAPHPQLS TLNSQPAALR AAIPVTRLSV VYRQKDHSGI VSTAHAINSG DASLPPAFGE IADVPPWSDL AFITAADAED CLRKVIQLCT EFVPQKLHWP NPIADVQVLA PMHKGVAGVA NLNVQLQAAL NPHARGLRAA TGEYRPADKV IQLRNNYDKN LFNGDIGSVV SVDAEHGTMV AEFDGEQHTF ERGDFSDLAL AYTISIHKSQ GSEYPVVVIP LLKGHFMMLQ RNLIYTAITR GRKKVYLVGE PAAYAMAVRN SESKQRLTHL REKIVVSSSR A
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