| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Oter_4595 |
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| Symbol | |
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| ID | 6207359 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Opitutus terrae PB90-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010571 |
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| Strand | + |
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| Start bp | 5897590 |
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| End bp | 5899512 |
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| Gene Length | 1923 bp |
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| Protein Length | 640 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 641694263 |
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| Product | RpoD family RNA polymerase sigma factor |
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| Protein accession | YP_001821466 |
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| Protein GI | 182416400 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.5682 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCGCGCA AAGCCAAGTC CGCCGCCGCG GATACCCATT CAGAGGCCGT TGAGGCCGTG
ATCGAGAAAA CCGCGTCCGC GCCAACAGAG GCCGCCACCG GCCCCGATAT TCCCGCCGGC
GGAATCAATG ACAAGATCCG TCACCTGATC CGGCTCTCCA AGGAGCAGGG TTATCTCACG
TTCGACGACA TCAATGAGGC GCTGCCGGAG TCGGTCGAGA ACCAGGAGGA GATCGATAAT
GTCCTCTCCA TCCTGCAGAA CCTCGAGATC GAGATCCTCG AACCCGATCA GGTCGACGAC
TATAAGCAGC GGATGGAGGA GGCGGAGGAG GAAGAGTCCC GCTCCTCGCA GCACGATATC
TTGGACGACC CGGTCCGGAT GTATCTCAAG CAGATGGGTC AGGTTCCGCT GCTGACCCGC
GAGCAGGAAG TCGAGATTTC GAAGCGGATC GAGAACGCCG AGTTGAAAGC GCAGGAAGCG
CTCTTCCAAG CCACGATCAT CGGCAATTAC ATCGTGACGC TCGGTCAGAA GCTGATCGAC
CGCCAGGAGC GGTTCGACCG CGTGGTGATC GACAAGAAAA TCGACAGTCG CGAATCGTAT
TTCAAGGGCC TGGAGAAACT CGTGCTCTCC ACCCGCAAGG CAGAAGAGGC CGTCGCCGAC
TCGTGGCAGG AATATCTCAA GGCCAAGTCC GACGCCGAGC GGAAGAAAGT CATGGCCAAG
CACAAGAAGC GCGAGACCAC GCTGCGGTCC CACTTCGGGA AATTTTTCTT CAAGCTCAAG
GTCTACGAGG AGTTTCTCGA ACAGCTCCGG CCCGTGCTCG AGGAGATCGA ATCGCTCGAT
CAGCAGCTCG AGCGGGCCAA GCACCCGAAG TCCAAGAAGG ACGCCACGAT CGACACGAAG
GTCATTCAGC ACCGGCTGAA GCAGATCGAG ACGATCCACC GCATTGACCC GGCCGAACTG
TTGAAGGTGG TTACGCAGAC GCGCGTGCAC GTGCGGGAGG CACACCAGGC CAAGACGGAG
ATGGTCGAGG CCAACCTCCG ACTCGTGATC TCGATCGCGA AGAAATACAC GAACCGCGGC
CTGTCTTTCC TCGACCTGAT TCAGGAGGGC AACATGGGCC TGATGAAGGC GGTCGAGAAG
TTCGAATACC GCCGCGGCTA CAAGTTCTCC ACCTACGCCA CGTGGTGGAT CCGCCAGGCC
ATCACCCGCT CGATCGCCGA CCAGGCGCGC ACCATCCGCA TTCCGGTGCA CATGATCGAG
ACCTTGAACA AGGTCATGCA GGTGCAGAAG CAGCTCCTGC AGGAATACGG TCACGAGCCG
ACGCCCGAGG AAGTCGCCGA CGAGATGAAT CTCCCCGTCG AGCGCGTCCA GCAGATCATG
AAGATGGCGC AGCAGCCCAT CTCGCTGCAG TCGCCCGTCG GCGATGGCGA TGACACCAGC
TTCGGTGACT TCATCGAGGA CAAATCCGCC GAAAATCCCT ACGACATGAC GGCGTTCTCG
CTCCTGCGGG AAAAGATCAT CGACGTGCTC GACTCGCTCA CCGAGCGCGA GCGCCGCGTG
CTTTCGCTAC GGTTCGGTCT GATCGATGGC TACAGCCGCA CGCTCGAGGA GGTCGGCAAG
CAGTTCAAGG TCACGCGCGA ACGTATCCGC CAGATCGAGG CCAAAGCGCT GCGCAAGATG
CGCCATCCGA CGCGCATCCG GCAATTGCAC GGATTCTTCG ATGCCGAGCA GATCGACAAC
GCGCAGAATC TAATGAAGGT CGCCGCGACG AGCGGGTTGC CGAACCGCCA GCCCCCCGTA
CCCGGTCTGC CGGGTCGGCC CGCGCTCCCG AGCGGATTGC CACAGCGTCC GGCCACGCCG
TCTGGTTCCT CCGCCGCGAA CCTGCCGCCC GTGCTGCCGC GGCCCACGCC GCTCAAGCCC
TAG
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| Protein sequence | MSRKAKSAAA DTHSEAVEAV IEKTASAPTE AATGPDIPAG GINDKIRHLI RLSKEQGYLT
FDDINEALPE SVENQEEIDN VLSILQNLEI EILEPDQVDD YKQRMEEAEE EESRSSQHDI
LDDPVRMYLK QMGQVPLLTR EQEVEISKRI ENAELKAQEA LFQATIIGNY IVTLGQKLID
RQERFDRVVI DKKIDSRESY FKGLEKLVLS TRKAEEAVAD SWQEYLKAKS DAERKKVMAK
HKKRETTLRS HFGKFFFKLK VYEEFLEQLR PVLEEIESLD QQLERAKHPK SKKDATIDTK
VIQHRLKQIE TIHRIDPAEL LKVVTQTRVH VREAHQAKTE MVEANLRLVI SIAKKYTNRG
LSFLDLIQEG NMGLMKAVEK FEYRRGYKFS TYATWWIRQA ITRSIADQAR TIRIPVHMIE
TLNKVMQVQK QLLQEYGHEP TPEEVADEMN LPVERVQQIM KMAQQPISLQ SPVGDGDDTS
FGDFIEDKSA ENPYDMTAFS LLREKIIDVL DSLTERERRV LSLRFGLIDG YSRTLEEVGK
QFKVTRERIR QIEAKALRKM RHPTRIRQLH GFFDAEQIDN AQNLMKVAAT SGLPNRQPPV
PGLPGRPALP SGLPQRPATP SGSSAANLPP VLPRPTPLKP
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