| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Oter_4587 |
|---|
| Symbol | |
|---|
| ID | 6205700 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Opitutus terrae PB90-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010571 |
|---|
| Strand | - |
|---|
| Start bp | 5889157 |
|---|
| End bp | 5890389 |
|---|
| Gene Length | 1233 bp |
|---|
| Protein Length | 410 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 641694255 |
|---|
| Product | periplasmic component of the Tol biopolymer transport system-like protein |
|---|
| Protein accession | YP_001821458 |
|---|
| Protein GI | 182416392 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG0823] Periplasmic component of the Tol biopolymer transport system |
|---|
| TIGRFAM ID | [TIGR02800] tol-pal system beta propeller repeat protein TolB |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.627226 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.707851 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCCTTGG GCTCAGTCCT GTTCATGGGT AAGCCCAAGT ATTCTCCCAT GCAAAAATTT
CTCCGCCTTG CCTTGCTCTT CACGGCGTTG CTCTCGCCCG TTTTCGCGCA GCGTGACATC
GGTTACGTCG ACGTCGTCGC CGAAAAGAAC ACGCTGCCGG TGCGCGTGTC GGCCAACGAG
CCGGAACTCA ACCGACTCGC GCTGCAGGCG TTCGGCGCCC ACGGGCGCTA TCGCGTGACG
GCGAGCAGCT ATCAGTTCGA CATCCGGTTC TCGGTGGTCA CGGCCAATCA GGTGCGCGTC
GATATCACCC GTGGCAGCGG CGGCACGCCG GTGGCGTCGC AGGTGTTCTC GGGGGCGAAC
GCCCGGCAGG CGCTGTTGCA CGCGGCCGAT TTCGCCGTCG AGCAGACGAA CGGGATGGGC
CTGAAGGGCT TCTTCACCGC TCAACTCGCG TTTATCGGCG AGCGGACCGG CAAGAAGGAG
GTCTACACCG CGGACCTGTT CTTCGGCGGG GCCAAGCAGA TCACCCGCGA CAACGCGCTC
GCACTCATGC CGCGGTGGGC GCCGGACGGC AATCGGCTGC TCTACACCAG CTTCTTCAAG
TCGGGCTTCC CGGACATTTT CCAGATCGAC CTCAGCACCT ACCAACGGAC GACCTTCGTC
AGCTTCAAGG GCACGAACAG CGGCGCGCGT TTCAGTCCGA ACGGCCAGCA GGTCGCGATG
GTGCTGAGTG GCGAGGGCAC GCCGGAGATA TATCTCAGCA ATGCCCAAGG CCGGCAGGTG
TCGCGCAAAA CCCGCTCTGA TGCGGTGAAG TCCTCGCCAT GTTTTTCGCC CGACGGCTCG
CGGATCGTGT TCGCGATGGA GCCGGGCCCA CAGCTTTACG TGATGTCGGT CGCCGGCGGC
GTGCCGTCGC GAATCACCTC AGGCATCAGC AGGTACTGCG CAGAGCCAGA TTGGAGTCGG
GCAAATCCCA ACAAGATCGC CTTCACCATG CGGGCGGGCG GCTATCAAAT CGGCGTGCTC
GACCTGTCGA CGCGGAAAGG CGCGCAGGTT TCGAAAGCGC CGTTCGACGG GATCGAGCCC
AGCTGGCTGG CGGACGGCCG CCACCTCGTT TACACGGCCC GCGACCGCCG CTCCAGCGTG
ATCTGCATTC TGGATACGGA GACCGGGAAG AGCGTCCGCG TGAGCCCGAC CTCGTTCGGC
AACGTGATGC AGGCGAGCGT CTGGACCCGC TGA
|
|---|
| Protein sequence | MPLGSVLFMG KPKYSPMQKF LRLALLFTAL LSPVFAQRDI GYVDVVAEKN TLPVRVSANE
PELNRLALQA FGAHGRYRVT ASSYQFDIRF SVVTANQVRV DITRGSGGTP VASQVFSGAN
ARQALLHAAD FAVEQTNGMG LKGFFTAQLA FIGERTGKKE VYTADLFFGG AKQITRDNAL
ALMPRWAPDG NRLLYTSFFK SGFPDIFQID LSTYQRTTFV SFKGTNSGAR FSPNGQQVAM
VLSGEGTPEI YLSNAQGRQV SRKTRSDAVK SSPCFSPDGS RIVFAMEPGP QLYVMSVAGG
VPSRITSGIS RYCAEPDWSR ANPNKIAFTM RAGGYQIGVL DLSTRKGAQV SKAPFDGIEP
SWLADGRHLV YTARDRRSSV ICILDTETGK SVRVSPTSFG NVMQASVWTR
|
|---|
| |