| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Oter_4583 |
|---|
| Symbol | |
|---|
| ID | 6206018 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Opitutus terrae PB90-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010571 |
|---|
| Strand | - |
|---|
| Start bp | 5886027 |
|---|
| End bp | 5886980 |
|---|
| Gene Length | 954 bp |
|---|
| Protein Length | 317 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 641694251 |
|---|
| Product | tyrosine recombinase XerD |
|---|
| Protein accession | YP_001821454 |
|---|
| Protein GI | 182416388 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG4974] Site-specific recombinase XerD |
|---|
| TIGRFAM ID | [TIGR02225] tyrosine recombinase XerD |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.422443 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAGCGC CGCGCGCCCG TGCCCAGGAC ACCAGCCAGG CCCCCCCGGC GTTCGCGGAC
GACATCGAGG CCTTCCTCGG CTACATCGCG CTCGAGCGCG GACTCGCGGC GAACACGGTC
GCCAGCTATC GACGGGATCT CGATCAGGCC GCGACTCACC TCGCCGCGCA GGGCGCGCGC
GATTGGCGCG CGGTCACCGG CGAGCAGGCG GCGGGCTGGA TTCACTCGCT GAGCTCCGCC
TCCTACACCG TGGCAAGCCT GGCGCGCAAA CTCAGCGCGT TGCGCAGCCT CGCGCATTTT
CTCGTGCGCG AACGATTCCG CGCGGATGAT TTCACCGCGC TGCTCTCCGG GCCGAAGGCG
AGCCGCCGGA TTCCGGGCAC GCTGACCGAG GAGGAAATCG CGCGGCTGCT CGCGGCGCCG
ACCGGCGGCG ACGCCCGCGC GCTGCGCGAT CGCGCGTTGC TCGAGCTGTT TTATTCGAGC
GGCCTGCGCG TGTCGGAGCT CGCCGGGCTG CTGCTGCAGC AGGTCGACCT CGAGCACGGA
TTCCTGCGCG TCTTCGGCAA GGGCGCGAAG GAGCGCGTGG TGCCGATCGG CGGCAAAGCG
ATCGAGGCGC TCGCGACTTA CCTGACGGCC GGCCGGCCGC ACTTCGTCCG CAGCCGTACG
GGCAGCCAGC TTTTCCTCAA TAAAAACGGC GGCCCGCTTT CACGCGTGAT GCTCTGGATG
CTCGTGAAAA AATACGCGAA GCGCGCCGGC CTCACCAAGA ACGTGAAACC GCACGGGCTG
CGCCACTCAT TCGCCACCCA CCTGCTCAGC GGCGGCGCGG ACTTGCGGGC GATCCAGGAA
ATGCTCGGCC ACGCCAGCAT TTCGACCACG CAGATCTACA CGTCGGTGGA GTCGCAACGG
CTGCTGGAGC AGCACGACAA GTTTCATCCG CGCAACCGGA TGGTTCGTCC GTGA
|
|---|
| Protein sequence | MKAPRARAQD TSQAPPAFAD DIEAFLGYIA LERGLAANTV ASYRRDLDQA ATHLAAQGAR
DWRAVTGEQA AGWIHSLSSA SYTVASLARK LSALRSLAHF LVRERFRADD FTALLSGPKA
SRRIPGTLTE EEIARLLAAP TGGDARALRD RALLELFYSS GLRVSELAGL LLQQVDLEHG
FLRVFGKGAK ERVVPIGGKA IEALATYLTA GRPHFVRSRT GSQLFLNKNG GPLSRVMLWM
LVKKYAKRAG LTKNVKPHGL RHSFATHLLS GGADLRAIQE MLGHASISTT QIYTSVESQR
LLEQHDKFHP RNRMVRP
|
|---|
| |