| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Oter_4480 |
|---|
| Symbol | |
|---|
| ID | 6208791 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Opitutus terrae PB90-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010571 |
|---|
| Strand | - |
|---|
| Start bp | 5771160 |
|---|
| End bp | 5772797 |
|---|
| Gene Length | 1638 bp |
|---|
| Protein Length | 545 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 641694146 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001821351 |
|---|
| Protein GI | 182416285 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3505] Type IV secretory pathway, VirD4 components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.0859872 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATCGCGG CCATGAAAAT CGCGCCTCCA GAAGTCCTCC TCCGCCGGTG GCTTCACGAT
CCAAACGCGC CGCTGTTCGC CGCGTTCGGC GTAGCGGCGG TCGCGCTGGC GATCGCACTT
TGGTTGGTGT TTCGGAACCT CCGTCACAAC GAGCCAGGAC TGAAAGCGCC GACGGCCCTC
GTGCTAGCAA TTGTCGTCTC CGGCTGCGGA TTCTTCGGCG CGCGCCTCAT GCCGGAGGAG
CGTTTTATGC CGATCTCTGG CGTGTTTTGC CTGATCGCAG CGGGCTTGTT TTTCTTCGCG
GACCGGCGCC GTTTCGTGCG CGACCCTGCG GGCGAGATCG TGGCGGATCG ATGGGAAGTC
GTGCTGGAGT TCGCGCACTT TCGCTGGACC CGGGATAAGC TGAATCGCCA TTTTTTCATC
TCGGGGGAGA CCGGTTCGGG GAAGACGACC GGCATGAATC AGCTGCTTGC GGCGCTCATT
CGCCGTGATC CGAGACTCGG CGGCCTTGTC ATGGCGAACA AGGGAGACGA GTGGTTTTAT
CTCGAATGGC TCGCGAAAAA ATACGGCCGG CAGCATGATA TCATTCGGCT TCGTCCACGC
GCCGCAGACG ATCCCGCCGG CACACCGCTG GAGCGGCTGA ACCTCACCGG AGACAGTCGT
TTTCCGTTCA CGACGCGCGC GCGCATCCTG GTCGACACGG CGGCGGCTTT GAATCCGAAG
GACGAAAGGA GCTTCTTTAA GATCAAAGGC GCAGCTCACA TCGGCCGCGC GCTGGAGCTG
CTGACGGAAC TGAAGCGGCC CGTCACTCCC ATGAATGCCT ACATGCTGCT CACCGTGCCC
ACCGAGTTGC AGGCCGCCCT GAATGCTTTG GCGGAACTCG ATCCGACGCC TCGCCGGCAG
CAGTTGGCGG ACGTGTTGGA ACAATCCTAC CTAAAGCATG AAGCTAAGGA GCAGCGCGCT
GGTGAGGTCG GAACGTCACA GAACTATCTC GAATATCTCG GCACGCCGGA GATCGCCGAA
GTTTTCAGCA GCAACGATCC CGACACGTGT TCGATCGCCG ACGTGGATAA GGGCAAAATC
CTCTGCATCG ACGTGCCGGA GGACTATTCC ACCGAGCGGA AATACGTCTT CACCGTCATC
AAGCTCCTCA TCTACCGCCA CGCACTTCGC CGCTACTCGT TGCCCGATTA CCAGCGCTAC
CAATTGAACC AACTGGTTTA CTGCGGCGAT GAATTCTCGA CGGCGATCAC GGCCAGCTAC
GATGGCACAT CCGACTACAA CGTCGTGGAC AAGCTTCGCG ATTGCTGGCT CACGCTGATC
ATTTCGAGCC AGGCTTTCGA GTCGCTCATC CCCCCGCAAA CGAAGGAGCA GGCCGACGTG
CTTTTGCTGA ACCTGAAAAA TCTCGTCATG TATCGCGCAG CTTCCGAGAC CGATGCTCTC
CGCTGCGCGA ACGCACTGGG CAAACGCTGG GTCGAGCGGT CGACGCGCAC CGTTCATCAG
GATCACACGG CCTACACCTA CCAACGGGCC GAGGAATTTC GGATAAAGCC GCACGAATTT
CGGAATCTTC CCGATCACAC GGCGGTTGTG CGGCATTGCA CGAACGGCTA CAAAAAGGTC
TGTCTCCGTC CCGCGTAA
|
|---|
| Protein sequence | MIAAMKIAPP EVLLRRWLHD PNAPLFAAFG VAAVALAIAL WLVFRNLRHN EPGLKAPTAL
VLAIVVSGCG FFGARLMPEE RFMPISGVFC LIAAGLFFFA DRRRFVRDPA GEIVADRWEV
VLEFAHFRWT RDKLNRHFFI SGETGSGKTT GMNQLLAALI RRDPRLGGLV MANKGDEWFY
LEWLAKKYGR QHDIIRLRPR AADDPAGTPL ERLNLTGDSR FPFTTRARIL VDTAAALNPK
DERSFFKIKG AAHIGRALEL LTELKRPVTP MNAYMLLTVP TELQAALNAL AELDPTPRRQ
QLADVLEQSY LKHEAKEQRA GEVGTSQNYL EYLGTPEIAE VFSSNDPDTC SIADVDKGKI
LCIDVPEDYS TERKYVFTVI KLLIYRHALR RYSLPDYQRY QLNQLVYCGD EFSTAITASY
DGTSDYNVVD KLRDCWLTLI ISSQAFESLI PPQTKEQADV LLLNLKNLVM YRAASETDAL
RCANALGKRW VERSTRTVHQ DHTAYTYQRA EEFRIKPHEF RNLPDHTAVV RHCTNGYKKV
CLRPA
|
|---|
| |