| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Oter_4408 |
|---|
| Symbol | |
|---|
| ID | 6208754 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Opitutus terrae PB90-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010571 |
|---|
| Strand | + |
|---|
| Start bp | 5701578 |
|---|
| End bp | 5702621 |
|---|
| Gene Length | 1044 bp |
|---|
| Protein Length | 347 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 641694074 |
|---|
| Product | RpoD family RNA polymerase sigma factor |
|---|
| Protein accession | YP_001821279 |
|---|
| Protein GI | 182416213 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
|---|
| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.756386 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 7 |
|---|
| Fosmid unclonability p-value | 0.120543 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATCTTA TCGACAACGA ATCGATCGGG CCATCGACCG GCGAAGTCCT CTCTCGACGA
TCGAGCGCGC GGGACGCCGC TGAATCCGAC GGTCGCTCCA GCCTCCAAAT TTATCTTCAG
GATATCGGCC AGACCCCGCT GCTCACCGCG CGGGAGGAAT TCGCGCTCGC GGAACGCGTC
CGGCGGGGCG ATGCCGGCGC CCGTGACCAC ATGATCCGGG CCAACCTGCG ACTGGTCGTC
AGGATCGCCA AAGACTATGC GCAGTATGGC CTGCCGCTCG CGGACCTCAT CAGCGAGGGC
AACGTCGGTC TCATCCATGC TGTTGATCGC TTCGACCCGC GAATCGGTGG CAAACTTTCG
ACCTATGCCG CATGGTGGAT CCGACAGGCC ATCCGTCGCG CCTTTGCGCA TCACGCCCGG
GCGATCCGGC TGCCGGTTCA CATGCTCGAC CGAATCGCCC GGCTTAGGCG GGCGCAAGCG
TCTTTGAGCG AGCAATTCGG ACGGGAGGCG ACCACCGACG AACTCGCGGC CGAGTTACAG
GCACCCGTGG AGAAGATCGC GCTCTGGAAG TCGGCCGGCG ACGCTCCGTT TTCCCTCGAT
GCCGCGGTCG GGACCGGAAG CGAATCGAGG CGGCTGTCCG AAACTATCCG CGACGAACGC
GCGCCCACGG CTTTCACGCA GTTGCGAGAT GCCACGACCG CACGCGATCT GCGCGCGATC
ATCGCCACCC TAGACGTACG CGAGGCCACC ATCCTCCGGC TGCGCTTTGG ATTGGATGGC
GACGAGCCGC AGACGCTCCA CGCGGTGAGC CTCCGGTTTG GCATCACGCG CGAACGAGTC
CGCCAGTTGG AACGGCGAGC CCTCCAAAAT GTGCGGAATG CCTGGGCGTT TCGGGAGCGG
ATCCGCACCC GGGAGGAAAT CGCGCTCGAC GAGCGCCATC ACCGGCTGAG GGCGGTCGTG
CGGGAGTTCG TTGCAGCCAG GCCCGCTAGA CGCAGCCGCC CCGTAGGATG GAATCTTCGA
TCCCTCGGTG CGTCTGATCG GTGA
|
|---|
| Protein sequence | MNLIDNESIG PSTGEVLSRR SSARDAAESD GRSSLQIYLQ DIGQTPLLTA REEFALAERV
RRGDAGARDH MIRANLRLVV RIAKDYAQYG LPLADLISEG NVGLIHAVDR FDPRIGGKLS
TYAAWWIRQA IRRAFAHHAR AIRLPVHMLD RIARLRRAQA SLSEQFGREA TTDELAAELQ
APVEKIALWK SAGDAPFSLD AAVGTGSESR RLSETIRDER APTAFTQLRD ATTARDLRAI
IATLDVREAT ILRLRFGLDG DEPQTLHAVS LRFGITRERV RQLERRALQN VRNAWAFRER
IRTREEIALD ERHHRLRAVV REFVAARPAR RSRPVGWNLR SLGASDR
|
|---|
| |