| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Oter_4185 |
|---|
| Symbol | |
|---|
| ID | 6208335 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Opitutus terrae PB90-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010571 |
|---|
| Strand | + |
|---|
| Start bp | 5409396 |
|---|
| End bp | 5411327 |
|---|
| Gene Length | 1932 bp |
|---|
| Protein Length | 643 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 641693853 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001821058 |
|---|
| Protein GI | 182415992 |
|---|
| COG category | [N] Cell motility |
|---|
| COG ID | [COG3225] ABC-type uncharacterized transport system involved in gliding motility, auxiliary component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAACTCG GCCGCAAAGC CCTCACGATC GCCCTGCTTT TTGTCGGGCT CGTGCTCGTC
AACTATCTCG CGTCGTCGAT TCCCGCACGG CTCGATCTCA CCGCCGAATC GGTCTACTCG
CTCTCGCCCG GCACCAAGGC GATGCTCGGC AAGATCGAGG AGCCGGTCAC GCTCGAGCTC
TACTTCACGA AGAACGCGTC CGGCCTCCCG ATCGCCTACA AAAACTACGC CACGCGCGTG
CAGGAGATGC TCCGGCAATA CGTGCGCGCC AGCGGCGGCA AGCTCCGGCT CGATGTCATC
AACCCGCGGC CGGATACGCC CGAGGAGGAG CGCGCGACCG CCGCCGGACT CACGCCGCAG
GTCGCGCAGA CCGGAGGCGA ACAGTTCTTC TTCGGACTCG TGGTGATCCA GGCGGATCAG
CAGAAGACGA TCCCGGCGTT CACGCCGCAG CGCGAACAGT TCCTCGAATA CGATCTCTCC
AAGCTGATCT ACAGCGTGCA GCAGTTCGAC AAGCCCAAGC TTGGCCTGCT CACCAGCCTG
CCGCTGCTCG GCACCAGCCC GCAGGAGATG CAAATGATGA TGATGATGCG CCGGCAGCCG
CAGCCCGGCC AGTTCATCGC GGAGGAATGG CGCGAATCGT TCGAACTCGT CACCGTCGAG
CCGACCGCGA CCGAACTGCC CGGCAACCTC GACGCGCTCG CCGTCATTCA CCCGCAGAAT
CTCTCGTCCA AGCTGCAGTT CGCGATCGAC CAGTTCCTAC TCGGCGGCAA GCCGGTGTTC
CTCTGCCTTG ATCCGTCCTC ACAGTATTTC AAGCGCCAGA GCAATCCGCA GCAGATGATG
ATGGGCGGCG GCGCGGCCAA CGTATCCAGC GATCTGCCCA CCCTGCTCGG CGGCTGGGGA
CTCACCTACA ACGCACAGAA AGTCGTCGGC GATCCCGTCA ATGCCACGCA GGTTCAGACT
CAGGGCGGCG GGCTCGCGCG TTACCCGATC TGGCTGAGCC TGCGGCAGGA AAACTTCAGC
GCCACCTCGA TGGCCACCGC GCAGCTCAAG TCGATGCTCT TCATCGAGCC CGGCAGCGTC
GCATTGAAGG AAGGCGCCGG CGTGACGTTC ACGCCGTTGG TGGAGACGTC CACGCAGGCC
GGCGAGCTCG ACGGAATGAT GCTCCAGTTT GCGCAGCCCG ACGATCTCGC CCGTCAGCTC
ACGCCCAGCG GCAAAAAGAC CATCGCCGCG CTCGTCACTG GCAAGTTCAA GAGTGCGTTC
CCCAACGGCG CGCCGAAGGA CGAGCCCAAG CCGGACGACA AAAAGGACGC CGCCGCAAAA
TCTGATGTAG CCGGGGTCGC TGACCCCGGC CCGGGCTCAA CGAGCCCGGC TACAACCCTG
AAAGAGTCCA AAGGCACGTC GACGCTGCTC GTCGTCACCG ATACCGACTG GCTGTTCGAC
GACTACAGCG TCCGCAAATT CAACTTCTTC GGCCAGACCG CCGCGGAACC ATTCAACGAC
AATCTCGCGT TCGGCGCGAA CGCTGTCGAC TTCCTCGCCG GCTCGCAGGA TCTCGTCTCG
ATTCGCGGCA AGGGTTCGTC AATCCGGCCG TTCACCGTCG TGCGACAGAT GGAAGTCGAG
GCAAACAAGA AGTACCAGGA AAAGCTCACC TCGCTCGAGG CGCAGTTGTC CTCAGTGCAA
ACCAAGCTCA GCGAACTGCA GGGCAAGAAG ACCGAAGGCA ATCGTCTCGT CGCCTCGCCC
GAGGTCACGA AGGCAATCGA GGATTTCCAA AAGCAGTCCG CTGCGCTGCG CGGCGAGCGC
CGGCAGATCC GGCGCGCCCT GCGCGAGGAT ATCGATGCGC TCGAAAACCG GCTGCTTGTG
CTCAATCTCG TCGCATCCCC GCTGCTGGTG GTCGCCTTCG GCCTCTGGTT CTACCGCGCC
CGCCGGAAAT AA
|
|---|
| Protein sequence | MKLGRKALTI ALLFVGLVLV NYLASSIPAR LDLTAESVYS LSPGTKAMLG KIEEPVTLEL
YFTKNASGLP IAYKNYATRV QEMLRQYVRA SGGKLRLDVI NPRPDTPEEE RATAAGLTPQ
VAQTGGEQFF FGLVVIQADQ QKTIPAFTPQ REQFLEYDLS KLIYSVQQFD KPKLGLLTSL
PLLGTSPQEM QMMMMMRRQP QPGQFIAEEW RESFELVTVE PTATELPGNL DALAVIHPQN
LSSKLQFAID QFLLGGKPVF LCLDPSSQYF KRQSNPQQMM MGGGAANVSS DLPTLLGGWG
LTYNAQKVVG DPVNATQVQT QGGGLARYPI WLSLRQENFS ATSMATAQLK SMLFIEPGSV
ALKEGAGVTF TPLVETSTQA GELDGMMLQF AQPDDLARQL TPSGKKTIAA LVTGKFKSAF
PNGAPKDEPK PDDKKDAAAK SDVAGVADPG PGSTSPATTL KESKGTSTLL VVTDTDWLFD
DYSVRKFNFF GQTAAEPFND NLAFGANAVD FLAGSQDLVS IRGKGSSIRP FTVVRQMEVE
ANKKYQEKLT SLEAQLSSVQ TKLSELQGKK TEGNRLVASP EVTKAIEDFQ KQSAALRGER
RQIRRALRED IDALENRLLV LNLVASPLLV VAFGLWFYRA RRK
|
|---|
| |