| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Oter_4144 |
|---|
| Symbol | |
|---|
| ID | 6207984 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Opitutus terrae PB90-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010571 |
|---|
| Strand | + |
|---|
| Start bp | 5357592 |
|---|
| End bp | 5360057 |
|---|
| Gene Length | 2466 bp |
|---|
| Protein Length | 821 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 641693813 |
|---|
| Product | putative phytochrome sensor protein |
|---|
| Protein accession | YP_001821018 |
|---|
| Protein GI | 182415952 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0628] Predicted permease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.0677009 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGCCGGG CGCTCGCTCA GCACGCGGGC CGCCGCTACA ACGACCGCGT GCCAGCAGCG
GCTCGCGGCA CCGGCGCGCG GGGAACCGGC ACGAACCGGC TCGGTCTGGC TTCGCACCCG
CCCGCGGCCA ATCGCCGTGC GGGCCCGTTT CGTTCGATGC CTCTCGCCAA GCCCACCGCC
GTCTCACCGC GGTTCATCAC GTTTCTCACG GTCGTGCTGG TCGTCGCCGT GCTCCGGCTG
GCCGAGGACG TGATGATCCC GCTGGCGCTG TCGCTGATGC TGGCGTTTCT GCTTTCGCCG
GTGGTCGTCC GGCTGCGCCG CTGGCGGCTG CCGCAGCCGG CGGCGATCCT GCTCACCGTG
ACGCTCGCCT TCTCGGTGAT CGGCGTCGTG GCGTGGCAGA TCACGAACCA GGCCCTGGCG
CTGCTGCAGG AGCTGCCGCG TTACGAGGAA AACCTCCGCA AGAAAGCCGC CGATCTGAAG
CAGCCCGATG CCTCCAGTGC GGTGACGCGC GCGATCGTCT CGCTCGAACG CACCTGGGCC
GAACTGCAAC AGCCTGCTCC CGACACCCAC TCTTCTCCGG CTACGCCGCC GGGCGCCCCC
AAACCCGTGC CCGTCGAGGT GAAGGAGGGC GACGCGACCT CGCTCGACAT CGGTCGCCAG
GTCCTTTCGA GCCTCATCAA ACCGCTGAGC ACCGCGGGCA TCGTCATCGT ATTCGTGATC
GTGATCCTGT TCCAGCGCGA CGATCTCCGC AGCCGGTTCA TCCGCGTGAT CGGCGGCGGG
CAGTTGAACG TCGCCACCGA GGCCGTCGAC GACGCGGCGC AACGGGTCTC GCGCTACCTG
CTGGCCCAAC TGATGGTGAA CACGTTTTTC GGCGTCGCGG TCGGGCTGGG GCTGTTTTTC
ATCGGCGTGC CGCACGCCGC GCTCTGGGGA CTGCTCTCCA CGCTGCTGCG GTTCATTCCG
TTCCTCGGTC CGATCATCGC CGTGATCTTT CCGCTCGCGC TCTCGGTCGC GGTGGACCCC
GGCTGGTCGA TGCTGCTGTG GACGGCGGCG CTCTACATCG TCGCCGAACT CGTCACCAAC
AACATCATCG AAACGCTCGT CTACGGCTCG AGCACCGGTA TCTCCGTGCT CGCCCTGCTG
ATCGCCGCGG TTTTCTGGTC GTGGCTCTGG GGCATGCCTG GGCTCTTCCT CTCCACGCCG
CTCACCGTCT GCCTGCTGGT GATCGGCCAA TACGTTCCCG GCCTGAAGTT CCTCAGCGTG
CTGCTCGGCA GTGAACCGCC GCTCAATCCC GCCGCGCAAT TCTACCAACG CATGCTGGCG
ATGGACCAGG AGGAGTTGTT CGCCACCGCC GATTCGCATC TGGCGCAACG CTCGCTCGCG
GAATTTTACG ACGACGTGTT CGTGCCCGCG CTGCTGATGG CGGAAGTGGA TCGACACAAC
GGCGTGCTCG CCGAGGTGCG GCAGAAATTC ATTCTCGAAT CGAGCCGTGA GCTCATCGAG
GAGCTCGCCT CGCGTCCGAG AGCCACCGAG CCTGAAAAGG AATCCGCCGC CACCCCGCCC
TCCCCTGAGC CGAGACCACT CGTGCTCGGA TTCCCCGCGC GCGACGAAGC CGACGAGTTG
GTCGCACTCA TGCTCGCGCA CCTGCTCTCC GAGCGTGGCT GGTCCGCCGA GGTCGAGGCC
GCGACCACGC CGCCCGAGGC GACGCTCGAA CGAATTCGCC GGCAGACGGC GCTCGTGTTC
ATCTCCGCGC TGCCGCCCTC GACGCTGAGT AGCGCGAGCC GCAGTTGCCG GCGAATCAAG
CACGCGAATC CGGCGACCAA GGTCCTCATC GGCGTGTGGA GCCCGTCCGG CAAGCTCGAC
TATCTCAAGC GCCGGCTCGA GCCGGCCGGG GCGGACGGCA TCGCGTTGCG ACTCTCCGAC
GCCGCCGCGC AGCTCGAGGC GTTGGTGCAC CATGAGCCCG CGCCGAAAGC ACCGGCGCCC
GAACCCGTGC CGAGCGAGTT GCTGGAGAAA ACGGAAACGA AGCTGGCCGT CACCCGCCCC
GAAGACGCGG CGGAGACCGT CATCCGCGAA CTGGCCCGCG CCTTCGGTGT GCCCGTGGCG
CTCGTGTCCG TGATCGAGTC CGATAGCGAT TTTTGGTCGT CCGCCGGCGG CACCAGCACG
CCGTTCGCCG AAAACTCGGT GCACGCCGAG GTGCTCACCT CCGACGTGTT GCTCGCCGTC
GAGGACGTGA CCAAGGAAGA GCGTTTCGCC ACGCAGGCGT TGCTGACCAA GCGCGGCGTC
CGCGCGTTCG CGTCCGTGCC GCTGCGCACG CAAAGCGGAC ACCTCGTGGG CAATCTCTGC
GTACTCGACA CGCAACCGCG GACGTTCAGC GATGCCGACA AGGAGCTGCT GCAGACGCTG
GCCGCGCAAT TGATGGAGGC GCTCGAGTCG AAACCGAGTC CGGGCGATCC CGCCGCCGTA
GGCTGA
|
|---|
| Protein sequence | MGRALAQHAG RRYNDRVPAA ARGTGARGTG TNRLGLASHP PAANRRAGPF RSMPLAKPTA
VSPRFITFLT VVLVVAVLRL AEDVMIPLAL SLMLAFLLSP VVVRLRRWRL PQPAAILLTV
TLAFSVIGVV AWQITNQALA LLQELPRYEE NLRKKAADLK QPDASSAVTR AIVSLERTWA
ELQQPAPDTH SSPATPPGAP KPVPVEVKEG DATSLDIGRQ VLSSLIKPLS TAGIVIVFVI
VILFQRDDLR SRFIRVIGGG QLNVATEAVD DAAQRVSRYL LAQLMVNTFF GVAVGLGLFF
IGVPHAALWG LLSTLLRFIP FLGPIIAVIF PLALSVAVDP GWSMLLWTAA LYIVAELVTN
NIIETLVYGS STGISVLALL IAAVFWSWLW GMPGLFLSTP LTVCLLVIGQ YVPGLKFLSV
LLGSEPPLNP AAQFYQRMLA MDQEELFATA DSHLAQRSLA EFYDDVFVPA LLMAEVDRHN
GVLAEVRQKF ILESSRELIE ELASRPRATE PEKESAATPP SPEPRPLVLG FPARDEADEL
VALMLAHLLS ERGWSAEVEA ATTPPEATLE RIRRQTALVF ISALPPSTLS SASRSCRRIK
HANPATKVLI GVWSPSGKLD YLKRRLEPAG ADGIALRLSD AAAQLEALVH HEPAPKAPAP
EPVPSELLEK TETKLAVTRP EDAAETVIRE LARAFGVPVA LVSVIESDSD FWSSAGGTST
PFAENSVHAE VLTSDVLLAV EDVTKEERFA TQALLTKRGV RAFASVPLRT QSGHLVGNLC
VLDTQPRTFS DADKELLQTL AAQLMEALES KPSPGDPAAV G
|
|---|
| |