| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Oter_4139 |
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| Symbol | ligC |
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| ID | 6207571 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Opitutus terrae PB90-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010571 |
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| Strand | - |
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| Start bp | 5353373 |
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| End bp | 5354410 |
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| Gene Length | 1038 bp |
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| Protein Length | 345 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 641693808 |
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| Product | ATP-dependent DNA ligase |
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| Protein accession | YP_001821013 |
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| Protein GI | 182415947 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1793] ATP-dependent DNA ligase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.141782 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.306207 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCGTTTC CCCTGCGCAC GGACTTGCCG CCGATGGAGG CGGCTTCGGT CGACGCGATT
CCGCTCGGCG ACGCCTGGCA GTATGAGCCG AAATGGGACG GATTTCGCTG CCTGGCGTTC
CGCGACGATG GCGAGGTTGA GCTGCGCTCG AAGGCCGGGC AGCCGCTCGC CCGGTATTTT
CCGGAGATTG TCCAGGCACT CGCCGCGTTG CGGCCCAAGC GTTTCGTGCT CGATGGCGAA
CTCGTGGTGC CGTCGGGCGA GGGGCTCGAC TTCGACGCGT TGCTGCAGCG GATCCACCCA
GCGGCGAGCC GCGTGAAAAA ACTCGCGGCG GAAACGCCGG CGCGGCTGGT GGTGTTCGAC
CTGCTGGCCG ACGAACGCGG CGCCTCGCTG GTGGAACGGC CGCTGCGCGA ACGGCGGGCC
GCGCTGGAAA GGTTTGCGCA GAAAAACTTC CCGACCGGAG CGGATGCGCG GGTGCGACTG
TCGCCAGCCA CCACCGAGCT GAAGTTGGCC AGGAAATGGT TCGGCGCGGT CGGCGCGAGT
CTCGATGGAC TGATCGCGAA GCGGCGCGAC GCGAGCTACG CCGCGGGCGA ACGCACGGCG
ATGGTGAAGA TCAAGCCATT GCGTACAGCC GACTGCGTCG TCGGCGGATT TCGTTATGCG
GAGAAGAAAA AGGAGGTCGG TTCGCTGCTG CTGGGGCTCT ACGACGCGGA CGGCAAGCTG
CACCACGTCG GTTTCTGCTC CGGATTGAAG GCGGCCGAGA AGCCCGCGCT GACGAGAAAA
TTGGAGGCAC TCGTCGGTGG TCCGGGCTTC ACGGGGCGTG CGCCGGGCGG GCCGAGTCGC
TGGAGTACCA AGCGCTCGAG CGAATGGCAG CCGCTCGAAC CGAAGCTCGT GGTCGAGGTG
TCGTTCGATC ACGTGACGGC GGGACGGTTC CGCCATGGCA CGAGCCTGCT GCGCTGGCGG
CCGGACAAGG CGCCGCGACA ATGCACGCTC GAGCAGTTGC ACCAAAAGAC CTCGCGGGCG
CTGGCGTGGT TGCGCTGA
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| Protein sequence | MAFPLRTDLP PMEAASVDAI PLGDAWQYEP KWDGFRCLAF RDDGEVELRS KAGQPLARYF
PEIVQALAAL RPKRFVLDGE LVVPSGEGLD FDALLQRIHP AASRVKKLAA ETPARLVVFD
LLADERGASL VERPLRERRA ALERFAQKNF PTGADARVRL SPATTELKLA RKWFGAVGAS
LDGLIAKRRD ASYAAGERTA MVKIKPLRTA DCVVGGFRYA EKKKEVGSLL LGLYDADGKL
HHVGFCSGLK AAEKPALTRK LEALVGGPGF TGRAPGGPSR WSTKRSSEWQ PLEPKLVVEV
SFDHVTAGRF RHGTSLLRWR PDKAPRQCTL EQLHQKTSRA LAWLR
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