| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Oter_4108 |
|---|
| Symbol | |
|---|
| ID | 6208383 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Opitutus terrae PB90-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010571 |
|---|
| Strand | - |
|---|
| Start bp | 5319854 |
|---|
| End bp | 5321347 |
|---|
| Gene Length | 1494 bp |
|---|
| Protein Length | 497 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 641693776 |
|---|
| Product | succinate CoA transferase |
|---|
| Protein accession | YP_001820982 |
|---|
| Protein GI | 182415916 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0427] Acetyl-CoA hydrolase |
|---|
| TIGRFAM ID | [TIGR03458] succinate CoA transferases |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGTCTGC CCTTTCCCGT TCTCACTGCG GAAGAAGCCG CTGCCATGGT GCACGATCGT
CAGACGATCG GTTTCGGTGG TTTTACCGCC GCCGGCGCCT GCAAAGTGAT CCCGCTCGCC
ATCGCGGCGC GCGCCAAAGC CGAACACGCC GCAGGTCGAC CGTTCAAGCT GGGCGTGATC
ACCGGCGCCT CGACCGGCAA GTCGCTCGAC GGCGCGCTCG CCGCCGCCGA GGCGATCGAC
TGGCGCACGC CTTATCAGTC GGATCCGACG CTGCGCAAAT CGATCAACGA AGGGAAAACC
CGCTTCTTCG ATCTGCACCT TTCGGCGGTG CAGCCGACCG TGCGCAGCGG CGTGCTGGGC
AAGGTGCACT GGGCGATCGT CGAGGCCAGC GACGTGAAGG CGGACGGCAC GGTGACGCTC
TCGACCTCCG TCGGCGCAGC CAACACGTTC ATCCGGCTCG CGGATCGCGT GTTGATCGAG
CTCAACGCGC ATCATCCGGC GGCGCTCACC GGTTTCCACG ATCTCTACGA GCCGGCCGAT
CCGCCGCACC GCCGTGAGAT TCCGCTCTAT GCGCCCACCG ATCGCATCGG TTCGCCCGTG
GTCAAGATCG ACCCGAAGAA GATCGCCGGC GTGGTGAAGA CCAACAATCC CGACGAGACC
GGCGCGTTCG ATCAACCCGA CGAAGTGACC AACCGCATCG GTGAGAACGT CGCCGCGTTC
CTCGCGAGCG AACTCAAGAT CGGCCGGCTG CCCTCGAGTT TTCTGCCGTT GCAGTCCGGC
GTGGGCAACA TCGCCAACGC GGTCATCGGC GCGCTCGGTT CGAACAAGGG CATCCCGCCG
TTCATGATGT ACACCGAGGT GATCCAGGAC TCGGTGATCG ATCTCATCAA ATCGGGCAAG
TGCACCTTCG CCAGCGGCTG CTCGCTGACG GTCAGCCCGC AAAAGCTCAC CGACATTTAC
CGCGACTTGG AATTCTTCCG TCCGCGCATG GTGTTGCGTC CGCAGGAAAT CAGCAACGCG
CCGGAACTCG TGCGCCGACT GGGGCTGATC ACGGTGAACA CCGCGATCGA AGTCGACCTG
TTCGGCAACG TGAACAGCAC GCACGTGATG GGCAAGGACC TGATGAACGG CATCGGCGGC
TCCGGCGATT TCACGCGCAA CGCGCATGTG TCGATCTACA CCTGCCCGTC GGTCGCGAAG
GGCGGCAAGA TCAGCACGAT CGTCCCGCTC GTCACGCACC TCGATCACAG CGAACATTCG
GTGCAGATCG TCGTGACGGA GTACGGCGTC GCCGACCTGC GCGGCAAGGC GCCGGCGGAT
CGGGCGCGGT TGATGATCGA AAAGTGCGCG CATCCCGACT ATCGGACGCT GCTCAGCGCT
TACCTCGACA TCTCGAGCAA GGGCCACGTG CCGCAGACGC TGCAGAACGC GTTCAGCATG
CATCTCGCGT TCCTTCAGCA GGGTGACATG CGCCAGGCGA AGTGGGTGGC GTAA
|
|---|
| Protein sequence | MSLPFPVLTA EEAAAMVHDR QTIGFGGFTA AGACKVIPLA IAARAKAEHA AGRPFKLGVI
TGASTGKSLD GALAAAEAID WRTPYQSDPT LRKSINEGKT RFFDLHLSAV QPTVRSGVLG
KVHWAIVEAS DVKADGTVTL STSVGAANTF IRLADRVLIE LNAHHPAALT GFHDLYEPAD
PPHRREIPLY APTDRIGSPV VKIDPKKIAG VVKTNNPDET GAFDQPDEVT NRIGENVAAF
LASELKIGRL PSSFLPLQSG VGNIANAVIG ALGSNKGIPP FMMYTEVIQD SVIDLIKSGK
CTFASGCSLT VSPQKLTDIY RDLEFFRPRM VLRPQEISNA PELVRRLGLI TVNTAIEVDL
FGNVNSTHVM GKDLMNGIGG SGDFTRNAHV SIYTCPSVAK GGKISTIVPL VTHLDHSEHS
VQIVVTEYGV ADLRGKAPAD RARLMIEKCA HPDYRTLLSA YLDISSKGHV PQTLQNAFSM
HLAFLQQGDM RQAKWVA
|
|---|
| |