| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Oter_4098 |
|---|
| Symbol | |
|---|
| ID | 6206165 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Opitutus terrae PB90-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010571 |
|---|
| Strand | - |
|---|
| Start bp | 5310331 |
|---|
| End bp | 5311791 |
|---|
| Gene Length | 1461 bp |
|---|
| Protein Length | 486 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 641693766 |
|---|
| Product | Na+/solute symporter |
|---|
| Protein accession | YP_001820972 |
|---|
| Protein GI | 182415906 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG4146] Predicted symporter |
|---|
| TIGRFAM ID | [TIGR00813] transporter, SSS family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.0584341 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATGCTG TTGCTCAAAT CGCTGTTTTC GCCGCGCTCA CGGCGCTCGT CGCCGTGCTC
ACTTACCTCA CGTGCCGCAA GGAGAAGCGG ATCAAGGAAT CGCGCGAATA TTTCCTGGCC
GGCGGGGCGC TGAGCTGGAT CTACATCGCG GGCTCCATCA CGTTGACGAA TATCAGCACC
GACACGCTGG TCGGCTGGAA CGGCAACCAG ATGCTGTTGA TCGTCTGGTG GGAGCTCGCC
GGCGTCGCGG GGCTCGTCTT GCTGGCGAAG ATCTTTGTTC CGATCTACTA CCGCTACGGC
TGCACGACGG TCACGGAGTT GCTGGAGCGG CGTTATCAGG ACAAGCACAT CCGCGCGACG
GTCGCGACGC TCTTCCTGCT GGGGAACCTG CTGCTGTTTC TGCCGGTGAT GCTCTACACC
AGCTCGCTCG TGATCAAATC GATGTTTGGG CTGGACGTGC CGCTGATGGT GCTCGCCACC
GGGATCGCCG TGCTCGGTGC GGCGTATGCC GTGCTCGGAG GGCTGCGCGC GGTGGCGGTG
TCCGACACCT ACAGCGGCTT CATCGTGCTC GGCATGGCCG TGCTGGTGGC GGTGTTTGCG
CTCAACCGCG TCGGCTGGAA CTGGTCGGGC GTACCCCCTG AGCGGTTGGC GCTGTTTGGG
GGACCGGACT CGGTGCTGCC GTGGTCCACG CTGCTCACCG GCATGATCTA CACGCAGCTG
TTCTATTGGA GCACGAACCA GACAATCACG CAGCGTGCGC TCGCGGCGCC CTCCATTCGC
GAGGCGCAGA AAGGCATCTA TGCCGCCGCG GTGATCCGGC TGCTGATCGT GCCGCCGATG
GTCGTGGTGC CGGGGATCTG CGCGTTCAAG CTGTTCGGCA AGCTGGGCGA CGCGACTTAC
GGCCGGATCG TCGCGGAGGT GTTGCCGCAG TATCTGCAGG GTGCGTTTGC CGCGGGCATG
GTCGCCGCGG TGGTCACCAG CTACAACGCG GTGCTCAACT CGTCCGCCGC GCTCTACGTC
TGCGACCTGC ATCAGCAATA CGTGAACCCC AAGCCCAATG TGCCGCGGAT GAGCGCGTGG
CTGCAGGCGG GCTTCACCGT GCTTTCCATC GTGCTGGTGC CGCTCTACGT CGGCGCGGAA
AGCATCATCC AGCTGATCCA GCAACTGCTG GGCTTGCTCA GCATGCCGAT CTTGTCGGCG
TTTATTACCG GCCTGCTTTT CCGCAACGTC GATGGCCGCG CGGTGATCGC GACGCTGGTG
TTCGGGGCGA CGCTGTATGG CGTGTTCACC TTCGTTTGGA CGCCGATGCA TTTCCTGCAC
CTGATGTTTA TCACGGTCTG GGCGTGCGTG GGCTTTGCCC TGCTGGTGAA CCGTGCGGTG
TTCGGACGGC GCGCCGAATT CGAACTCGGT TCGGCGGAGC GGCGTCGGGA CATCATGGCG
ATACTGCGGC GCGACAGCTG A
|
|---|
| Protein sequence | MNAVAQIAVF AALTALVAVL TYLTCRKEKR IKESREYFLA GGALSWIYIA GSITLTNIST
DTLVGWNGNQ MLLIVWWELA GVAGLVLLAK IFVPIYYRYG CTTVTELLER RYQDKHIRAT
VATLFLLGNL LLFLPVMLYT SSLVIKSMFG LDVPLMVLAT GIAVLGAAYA VLGGLRAVAV
SDTYSGFIVL GMAVLVAVFA LNRVGWNWSG VPPERLALFG GPDSVLPWST LLTGMIYTQL
FYWSTNQTIT QRALAAPSIR EAQKGIYAAA VIRLLIVPPM VVVPGICAFK LFGKLGDATY
GRIVAEVLPQ YLQGAFAAGM VAAVVTSYNA VLNSSAALYV CDLHQQYVNP KPNVPRMSAW
LQAGFTVLSI VLVPLYVGAE SIIQLIQQLL GLLSMPILSA FITGLLFRNV DGRAVIATLV
FGATLYGVFT FVWTPMHFLH LMFITVWACV GFALLVNRAV FGRRAEFELG SAERRRDIMA
ILRRDS
|
|---|
| |