| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Oter_4053 |
|---|
| Symbol | |
|---|
| ID | 6204701 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Opitutus terrae PB90-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010571 |
|---|
| Strand | - |
|---|
| Start bp | 5253550 |
|---|
| End bp | 5256900 |
|---|
| Gene Length | 3351 bp |
|---|
| Protein Length | 1116 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 641693721 |
|---|
| Product | DNA polymerase III, alpha subunit |
|---|
| Protein accession | YP_001820927 |
|---|
| Protein GI | 182415861 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0587] DNA polymerase III, alpha subunit |
|---|
| TIGRFAM ID | [TIGR00594] DNA-directed DNA polymerase III (polc) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCGGAGG TGGGCGTGAT GAGCGATTAC GTCGAGCTGC ACGCGAGCAG CGCGTTCAGT
TTTCTGCGCG GAGCGTCGCA GCCGGAGGAC CTGGCCGCGG AGGCGGCGCG GCTGGGACTG
CCGGCTCTGG CGATCGCCGA TCGCGACGGC GTGTATGCGG CGGCGCGGCT GTATCAGGCT
GCGCGGGAAT TGCAGTTGCG CGCCATCGTC GGCGCGGAGG TGACGCTGGA GGACGGCACC
GCGCTGCCGC TGCTCGTGAC GAACGGCACG GGCTATGCGA ATCTCTGCCG ACTAATCAGC
ACGGCGAAAC TCGAGCCGCG CGAGGCGGCG GTGGTGGAGG CGTGGCGGCG CGAGCATCCG
TTGGTCACGC CGGCGGACAG CCACGAGGAT CCGCGGGCGC GGAAGCGACC CTGCTTCGCG
ACGTGGCGCG AGCTGGCGGA GCACGCGGAA GGGCTGATCG CGCTGACCGG CGATGAGGAC
GGGCCGGTGT TGAGCGCGTG GCGGAACCGC GGCGCCGACG CCGCGGCGGC AGTCGCCGCG
CGGCTGCAGA CGATCTTCGG AGCGGACCGG CTTTACGTCG AACTGCAGCG GCGCCGGCAG
CGCGGCGAGG ACACGGCGCT GTGCTTTCTC GCTGATCTCG CTGCGGCGCG GCAATTGCCG
CTGCTCGCGA CCGGAGGGGT GCGCTACGCC ACGCGCGCGG AGCGGCCGAT CGCGGACGTG
TTCACGTGTT TGCGCGAACA CACCACGCTC GACGCGGCGG GCCGGCTGCT TTCGCCCAAC
GCGGAGCGGC ATCTGCGCTC GGGCCGCGCG ATGGCCGAGT TATTTCAGGA TTATCCCGAG
GCGGTGGTGA ACAGCCTCCG GCTCGCGGAG CGGCTGGATT TCACGCTGCA GAACCTCGAT
TACCGTTTCC CGGATTTTCC GGTCGGGCCC GGCGAGACGA TGGAGTCCGT GCTGCGCGAG
CAGACATATG CGGGCGCCCG CGAACGGATC GGCGAGCTCA CGCCGAAGCT GCGCGCGCAG
CTCGACCGCG AACTGGCGAT GATCAACAAG CTGGGATTCC CCGGGTATTT CCTGATCGTC
TGGGATATCT GCCAGTGGTG CCACCAGCGG GGGATCCTGA TCCAGGGCCG CGGCTCGGCG
GCGAACAGCG CGGTGTGCTA CGCGCTCGGG ATTACCGCGG TGAATCCACT GCGCTACCGG
CTCCTCTTCG AGCGGTTCTT GAGCGAAGGC CGCGTCGGCA AGGATGGGCA TCCCTCATGG
CCCGACATCG ATCTCGACCT GCCGAGCGGC GATTTGCGCG AGTCGGTGAT CCAGGAAATC
TACCAACGTT ACGCGCCGCG CGGCGCGGCG ATGGTGGCGA ACGTGATCAC GTATCGCGGT
CGCAGCGCGG CGCGCGAGAT TGGCAAAGTG CTCGGACTGC CGGGGGACGT GCTCGACCGG
TTCTCGGCGC TTTATGCGAA CGGCGATTTT CCGCACACGC TCGATCTTGC GCAGCAGGTG
AAACTGTCAG GGCTTCCGGG CGGGCATCCA CGGTTGCCGG CGATGCTGGC GTTGTATCGG
CAGATGCAGG GGCTGCCACG GCATCTCGGT CAGCACTCGG GGGGAATGGT GTTTTGTCCC
AACCGGCTCG ATCGCGTCGT GCCGATCGAG AACGCGTCGA TGGAAGGCCG GCGCGTGGTG
CAGTGGGACA AGGACGACTG CGAGGAACTG GGCCTGGTGA AAGTCGATTT CCTCGGTCTG
GGGATGATGG CGGTGCTGCA GGACGCGTTC GCGCTTTGCA CGCAACGCGG AGAGCCGCTG
ACGCTGCACA CGGTGCCGCC GGAAGATCCG GAGACCCTGG CCACGATCCG ACGCGCGGAT
ACGATCGGCG TGTTCCAGGT GGAGAGCCGC GCGCAACAGG CGACGCTGCC GCGGCTGCAG
CCGCAGAACT TTTACGACGT GGCGATCGCC GTCTCCATCG TGCGGCCCGG ACCGATCGCG
GGCCGGGTGT CGCATCCGCT GATCAAACGC CGCGCCGGCG AGGAGAAGGT CGTTTATCTC
GATGAGAGCG TGGAGCACCT GATGAAGCCG ATTCTCGAGC GGACGTGGGG GGTGATCCTG
TTTCAAGAAC AGATGTTGGA GACGGCGATG GTGCTGGCGG GGTTCAGCGG TGCGCAGGCG
GAGGAGCTAC GGCGGGCGTT TGGGTTCAAT CGCAACACCG CGCGGCTGAG GAAAGTGGTG
GAGCAATTGC AGCTCGGGAT GCGCGCGCGC GGCCACAGCG AGGCGGTGGT GCAGAAGGTG
CTCGAGTCGT CGACGACGTT TGCGGGGTAT GGCTTTCCCG AGAGCCACGC GATCTCGTTC
GCGCTGCTGG CGTATGCAAG CACCTGGCTG AAGGTGCATC GGCCAGCGGA GTTCACTGCA
AGCCTGCTCA ACAACCAGCC GATGGGGTTT TACTCGCCGG CGACGCTGAT CCAGGACGCG
CGGCGGCACG GACTGAAGGT CAAGGCCGGG TGCGTGCAGC GGTCCAGCTG GGAGTGCACG
GTGGAGGCGG ACGACACGAT CCGGATCGGG CTGCGCTATG TGAAGGGCCT GCGCGAAGCG
AACGTGCGCG CGATGCTGGC CCAGCGTGCT GCGCGGGCGT TCACGTCGAT CGATGACTGG
CTGGCACGGA CAAGCTTCTC GGCGGCCGAG CGACGGGCGC TGGCGGCGGT CGGAGCGTTG
CGCACGCTGG CGAGCCATCG TCGTGCGGCG CTGTGGCAGG TCGAGGCGGC GTGGTCGGCC
GAGGAGACAT TGCTGCAACA GGCAGGGCAG GAGAGCAGTG GCACGGGCGT CTCGCCCGTG
GAGTCGACTC CGGGTGACAC AACAAAGGAA GATCGACAGA TTATCACGAA ACGGATGCCC
GAATCGACCG ACATGGGCGG GACGCTCATG CCACGCACAG CTACGCCGCT CGCGCCGATG
ACGCCGGCGG AGCGGATGCA CGCGGACTTT CGCGGGATGA ACCTGACGGT GGGCACGCAT
CCGATGGCGC TCGTGCGCGA GCGGCTGCCG GACGTGTGGC GCGCGGCCGA CCTGCCGCTC
GGCCGTGACG GCGAGCGCGT GAAAGTGGCC GGCAGCGTAA TCTGCCGGCA GCGGCCGGGC
ACGGCCAAGG GGTTCGTGTT CGTGTCGCTC GAGGACGAGA CGGGCATCGC GAACGTGGTC
GTTTATCCCG ATCTGTTCGA GCAACGGCGG ATGACGATCA ACGAGGAACC GGCCTTGTGC
ATCGTGGGGC GGATGCAGAG CGATCGCGGC GTGATTCACG TGAAGGCGGA GACGATCGAG
GCGTTGAACC TGGCCGAGTT GCCGACGCAG ACCTCGCACG ATTTCCGGTG A
|
|---|
| Protein sequence | MAEVGVMSDY VELHASSAFS FLRGASQPED LAAEAARLGL PALAIADRDG VYAAARLYQA
ARELQLRAIV GAEVTLEDGT ALPLLVTNGT GYANLCRLIS TAKLEPREAA VVEAWRREHP
LVTPADSHED PRARKRPCFA TWRELAEHAE GLIALTGDED GPVLSAWRNR GADAAAAVAA
RLQTIFGADR LYVELQRRRQ RGEDTALCFL ADLAAARQLP LLATGGVRYA TRAERPIADV
FTCLREHTTL DAAGRLLSPN AERHLRSGRA MAELFQDYPE AVVNSLRLAE RLDFTLQNLD
YRFPDFPVGP GETMESVLRE QTYAGARERI GELTPKLRAQ LDRELAMINK LGFPGYFLIV
WDICQWCHQR GILIQGRGSA ANSAVCYALG ITAVNPLRYR LLFERFLSEG RVGKDGHPSW
PDIDLDLPSG DLRESVIQEI YQRYAPRGAA MVANVITYRG RSAAREIGKV LGLPGDVLDR
FSALYANGDF PHTLDLAQQV KLSGLPGGHP RLPAMLALYR QMQGLPRHLG QHSGGMVFCP
NRLDRVVPIE NASMEGRRVV QWDKDDCEEL GLVKVDFLGL GMMAVLQDAF ALCTQRGEPL
TLHTVPPEDP ETLATIRRAD TIGVFQVESR AQQATLPRLQ PQNFYDVAIA VSIVRPGPIA
GRVSHPLIKR RAGEEKVVYL DESVEHLMKP ILERTWGVIL FQEQMLETAM VLAGFSGAQA
EELRRAFGFN RNTARLRKVV EQLQLGMRAR GHSEAVVQKV LESSTTFAGY GFPESHAISF
ALLAYASTWL KVHRPAEFTA SLLNNQPMGF YSPATLIQDA RRHGLKVKAG CVQRSSWECT
VEADDTIRIG LRYVKGLREA NVRAMLAQRA ARAFTSIDDW LARTSFSAAE RRALAAVGAL
RTLASHRRAA LWQVEAAWSA EETLLQQAGQ ESSGTGVSPV ESTPGDTTKE DRQIITKRMP
ESTDMGGTLM PRTATPLAPM TPAERMHADF RGMNLTVGTH PMALVRERLP DVWRAADLPL
GRDGERVKVA GSVICRQRPG TAKGFVFVSL EDETGIANVV VYPDLFEQRR MTINEEPALC
IVGRMQSDRG VIHVKAETIE ALNLAELPTQ TSHDFR
|
|---|
| |