| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Oter_3988 |
|---|
| Symbol | |
|---|
| ID | 6205462 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Opitutus terrae PB90-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010571 |
|---|
| Strand | + |
|---|
| Start bp | 5179324 |
|---|
| End bp | 5181129 |
|---|
| Gene Length | 1806 bp |
|---|
| Protein Length | 601 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 641693656 |
|---|
| Product | peptidase M10A and M12B matrixin and adamalysin |
|---|
| Protein accession | YP_001820862 |
|---|
| Protein GI | 182415796 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACCGGC CTTTCTCTTT CCGCACTCCG CTCAATGTAA CGTATTGGGT CACATTCGGC
GGAGGCTGCC TCCGCCGCGC GATCCTCGCC CTCGCCATCG CATCCACGGT GCAGGCCTAC
ATGATCTCCG GAACGTCATG GCCCAGCGGC GACATTCCCC TTCAACTCCA GCTCGGCGCA
CCCGCGGCTC CGTTGCTCGA CGGTTCGACC CACTGGGATG ACGTGGCGAT TTCCGCCCTG
AACCGCTGGA ACGAAATCCT CGGCCGCGCG CGCTTCTCCG GTGTGAAGAA CTCCAACGCC
GGGCGCGATT ACCCGAACGT CTTCAACAAC GTCTTCTTCA GCTCAACCGT CTACGGCGAC
GACTGGGGCG ATCGCGTTCT CGCGATCACC CTTCGTCGTT CCCGCGGCTC CAATACGGCC
GAAGCCGACG TGCTCGTAAA CTCGAAGGAA AGCTGGAACT CCTATCGCGG CAGCCTGCGC
TCCAGTGTCC GCGATCTCGA ACGGGTGCTG GCGCATGAGT TCGGCCACGT ACTCGGGCTC
GGCCATCCGG ACGAGGCGAA GCCCGCCCAA TCTGTCGCGG CCGTGATGAA CAGCCACGTG
AGCAACGTCT ACACGCTGCA GCCCGACGAC GTCGCCGGCG CAAATGCTCT TTACGCCTCG
GGCATCGGCG CCCCCGTCGC CACCGGTTCG CTGACCGACC AGACCATCAC CGCCGGCTCG
CCGCTCACAC TCACGTTCGC CGCGTCCGGC ACCAACGTGA CCTACGATTG GACGTTCGCG
CCCTCCACCA ACGCCACGCA GCGCGAGCTG CTCGACGGCG ACGGCGAGCG CTGGAGCGCC
GCGTCGTTTT CCCTTTTCTC CGCGCAGCCC TCCGATAGCG GCACCTATTC CGTGCTCGCC
CGGAACGCCG CGGGCGCCTC CACCGTCTCG ACCGCACGCG TGACCGTCAC GCCGGTGAGC
ATGGCCAACG CCATGCTCGC CAACCTCTCG GCACGCGGAC GCGCCGGCAC CGGCAGCGAG
ACGTTCATCG TCGGCTTCGT GGTGACCGGC AAGACCCCCA AACCCGTCCT CGTGCGCGCG
ATCGGCCCCA CGCTCTCCGG TCAGGGCATT CAGCATCCGC TGGCCGATCC ACGGCTCACG
TTGTTTCGCA CGGTCGATGG CGCGTCCAGC ACCGTGGACG CGAACGATAA CTGGTCCGCC
GACGCCGCGA CCGCCGCAAA TTTGCGCGCC GCCGCGCAAC GGCTCGGCGC CTTCGCGTTG
CCGGATGGCA GCACCGACGC CGCCTTGCTC GTCACGCTCG AGCCCGGCGT CTACTCCGCG
CATGTCGACA GCCAGGGAGG CGCCGCCGGG ATCACGCTCG TGGAGGTGTA CGATGCCGAT
CAGCAGCTGA GTGATTCTCT GACGCACAAA CTGGTCAACG TCTCCACCCG CAGTTTCGCC
GGCGCCGGCG AGGAGCAGTT GATTGCCGGC TTCGTGGTCG GCGGCACGTC GCCGAAACAA
GTTTTGCTTC GCGCCGTCGG CCCCGGCCTG AAGTCGCGCG GCGTCACCGA CGTCAACACG
GATCCGAACC TGACGCTCTT CCGCGGGACG AACGCGATCG CGGACAACGA CGACTGGGCT
TATTCGAACC AGACGGATCT GTTGCCCGCC GTTTTCACCC GCGTCGGCAC CTCGCAACTC
GATCCCGACA GCTACGACAG CGCGCTGCTC ATCACGCTGC CGCCCGGCGT CTACACCGCG
AGCGCCGCCG GCCGTTCGGG CGAAACCGGC GTCGTGTTGC TCGAGGTCTT CGAAGTCGCC
GAATAG
|
|---|
| Protein sequence | MNRPFSFRTP LNVTYWVTFG GGCLRRAILA LAIASTVQAY MISGTSWPSG DIPLQLQLGA
PAAPLLDGST HWDDVAISAL NRWNEILGRA RFSGVKNSNA GRDYPNVFNN VFFSSTVYGD
DWGDRVLAIT LRRSRGSNTA EADVLVNSKE SWNSYRGSLR SSVRDLERVL AHEFGHVLGL
GHPDEAKPAQ SVAAVMNSHV SNVYTLQPDD VAGANALYAS GIGAPVATGS LTDQTITAGS
PLTLTFAASG TNVTYDWTFA PSTNATQREL LDGDGERWSA ASFSLFSAQP SDSGTYSVLA
RNAAGASTVS TARVTVTPVS MANAMLANLS ARGRAGTGSE TFIVGFVVTG KTPKPVLVRA
IGPTLSGQGI QHPLADPRLT LFRTVDGASS TVDANDNWSA DAATAANLRA AAQRLGAFAL
PDGSTDAALL VTLEPGVYSA HVDSQGGAAG ITLVEVYDAD QQLSDSLTHK LVNVSTRSFA
GAGEEQLIAG FVVGGTSPKQ VLLRAVGPGL KSRGVTDVNT DPNLTLFRGT NAIADNDDWA
YSNQTDLLPA VFTRVGTSQL DPDSYDSALL ITLPPGVYTA SAAGRSGETG VVLLEVFEVA
E
|
|---|
| |