| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Oter_3966 |
|---|
| Symbol | |
|---|
| ID | 6205640 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Opitutus terrae PB90-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010571 |
|---|
| Strand | - |
|---|
| Start bp | 5148256 |
|---|
| End bp | 5150481 |
|---|
| Gene Length | 2226 bp |
|---|
| Protein Length | 741 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 641693634 |
|---|
| Product | peptidase M50 |
|---|
| Protein accession | YP_001820840 |
|---|
| Protein GI | 182415774 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1566] Multidrug resistance efflux pump |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.884919 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAAGCCG TAGCGACTGC AGGATTGCCC GGGCACGGTG CGATTTCGCC CGAACAACGA
CGACTCGAGG CGATCGTTCC GGCGCGACTG CGCGCCGACA TCGTGATCCG GCGACAGATG
TTCAAGCATC AGGAATACTA CGTGCTGAAG GATCCGCTGG CGCTGACGTA TTTTCGGCTG
CTGCCGGAGG AAACCTACAT CCTGACCCTG CTCGACGGGA AGCGCACGCT CGGAGAAATC
GCCGAGCGGT TCAATGCCCG TTACCCGAAT CATGTGCGGA CTGCGGCTGA ACTCGCCCAG
TTCACGAATC AGCTGGGCGC GGGCGGCCTG CTCAACATCG GCGCGAGCCG GTTTGTCGAA
AGCGCCACCC AGACCAGGCC GCAACAGCTG ATGATGTTCT GGGCCAAGAT CATCCAGGGA
TTCCTTTTCG TCAAAGTCCC CCTGATCGAC CCGAGCGCCT GGCTTGGTCA GCTGGCGCAC
GCCATCCGCT TTGTTTGGAC GAAGTGGTTC GTCGGTGCCG CGCTGCTTTT CTACGTCTGG
ACGGCTGGAC TGTTGCTGGC GAACTCGGGC GAGTTTGCGA CCCGGCCCGT CGACTTTTTT
TCCGCCAGCA ATCTGGTGCT TTTGTGGTTC ACGATCATCG TGATCAAGAC GCTGCACGAG
TTCGGGCATG CGACCACCTG TCGTCATTTC GGGGGCGAGG TGCACGAAAT GGGCGTGTGC
CTGATGTGTT TCACCCCGTG CGGCTACGTG GATGCATCGG ACGCGTGGAT GATGCGGCGG
AAAAAGCACA AGCTTTATAC CACGATCGCC GGCATTTTCA CGGAGCTGAT CATGGCGTGC
ATCGCGGCCC ATTTCTGGCT CGTCCTGCCG GAGGGGATCG GCCGCAGCGT GGCGTTCAAC
GCGATGATTG TCGCGAGCGT GAACACGATC GTTTTCAACA TCAATCCGCT GATGCGGTTC
GACGGTTACT ACGTGGTTTG CGACCTGCTG GAGATTCCCA ATCTCCGTTC AAAGGCGATG
GCGTTTTGCT CGTATCAGCT GCAGCGCCTG TTCCTCGGCT ACCAAAACCG CAATCAGGAG
TCGCAGTTCG GAGCCGAATC CAGGGGGTAC GTGTTCGTGA TCTACGCGGT GCTCGCCTAC
CTGTACATGA TCACGATCAT CTACGGGTTC ACTCAGATCT TCGGCCGGGT GCTGGCGCCG
ATCGGGCTGC GCGATTTCGG CCTTGGGCTC GGTTTTTTTG TGGAAGGCTC ATTTGTGGCG
CTGCCATTTA TCAAGGTCAT CATGGATGCG ACGAAACCCG GGGCGCACAT CGTCAAGACA
GGCTCGAGCT GGCGCCGAGC CTTAACGACT ATCGCCGTGC TGGCGGGCCT CGTGGCGATC
AGTTTTTTCG TGCCGGCGCA CTACAAGGTC ACGCAGCAGG CCATCGTGAC CGCCGAGTCG
CCGGAGGTGA TGGCCTCGGA TGTGGGCGGC GTGATCAAGC AGGTGCACGT TCGTACCGGG
CAGTGGGTGC AGCCGGGCGA TCTCGTGGTG ACGCTTGACA ATCCCGAAGT GATCGCGGAG
TTGCGCGTCG CCGAGGCGAC CCGGCAACAG TCTCGTATTC GCTTCAGCTC GCTGCGTTAC
TCCCCCGCCT GGGGCGCGGC CGAAACACAG GCTCATGCCG CGCAGGAAAT GGAACTCGCG
GAAGCTTCGT ACCAGGTGGC CTCCGCGCGC GCGGCCAAGC TGCAGTTGCG AGCGCGGGTG
GGTGGGTATG TGCTCACTCC CGACGTGGAG AAACTGGCCG GCGCTTACGC CTCGCCCTAC
GTGCCGATTC TGCGGCTGGG GGACACCCGT CACATGCGGG TGCTGATCCC GCTCACGGAA
AACGAGGCCC AACTGGTCAG CCCGGGCAAC AAGGTGCGCG GCCGCTGGCT GGCCACGGCC
CAGCTGTTCG AGACGGAGCT GGACACCGTA TCCTCCCAGC CGGCTCAGCC CACCGACATC
CATTACGGGA TGCTCGCCTA CTTCGGAGGG TCGGTGCCAT CGCAGATGAT GCAGCGCGAT
CCACGCGCCC GCCCGGATTT TCCGGTGTTC GTGGCCAGTG CGCCGTTGCC CAAGCCGGAT
CACGAGGTTC AGGAGGGACT GCGCGTGCGG CTGACGATTC AAGGAAATCG CACCACCGTG
GCGGAGAAGA CCTGGCGCTG GTTCATGTCG CTGTTCAACG TGAAACCCCA GCCGGTGCGC
CGGTGA
|
|---|
| Protein sequence | MEAVATAGLP GHGAISPEQR RLEAIVPARL RADIVIRRQM FKHQEYYVLK DPLALTYFRL
LPEETYILTL LDGKRTLGEI AERFNARYPN HVRTAAELAQ FTNQLGAGGL LNIGASRFVE
SATQTRPQQL MMFWAKIIQG FLFVKVPLID PSAWLGQLAH AIRFVWTKWF VGAALLFYVW
TAGLLLANSG EFATRPVDFF SASNLVLLWF TIIVIKTLHE FGHATTCRHF GGEVHEMGVC
LMCFTPCGYV DASDAWMMRR KKHKLYTTIA GIFTELIMAC IAAHFWLVLP EGIGRSVAFN
AMIVASVNTI VFNINPLMRF DGYYVVCDLL EIPNLRSKAM AFCSYQLQRL FLGYQNRNQE
SQFGAESRGY VFVIYAVLAY LYMITIIYGF TQIFGRVLAP IGLRDFGLGL GFFVEGSFVA
LPFIKVIMDA TKPGAHIVKT GSSWRRALTT IAVLAGLVAI SFFVPAHYKV TQQAIVTAES
PEVMASDVGG VIKQVHVRTG QWVQPGDLVV TLDNPEVIAE LRVAEATRQQ SRIRFSSLRY
SPAWGAAETQ AHAAQEMELA EASYQVASAR AAKLQLRARV GGYVLTPDVE KLAGAYASPY
VPILRLGDTR HMRVLIPLTE NEAQLVSPGN KVRGRWLATA QLFETELDTV SSQPAQPTDI
HYGMLAYFGG SVPSQMMQRD PRARPDFPVF VASAPLPKPD HEVQEGLRVR LTIQGNRTTV
AEKTWRWFMS LFNVKPQPVR R
|
|---|
| |