| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Oter_3818 |
|---|
| Symbol | |
|---|
| ID | 6206538 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Opitutus terrae PB90-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010571 |
|---|
| Strand | - |
|---|
| Start bp | 4959285 |
|---|
| End bp | 4960283 |
|---|
| Gene Length | 999 bp |
|---|
| Protein Length | 332 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 641693486 |
|---|
| Product | bile acid:sodium symporter |
|---|
| Protein accession | YP_001820693 |
|---|
| Protein GI | 182415627 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0385] Predicted Na+-dependent transporter |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.530909 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.405756 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGGCTGA AAGTTGACTG GTTTCTCGCC GGGATGGTCG CAGCCACCGC GCTCGCGTGG
CTCTTCCCCG AGCCCGGTGC CAGCGGCGGC TGGTTGTATC CGGACATCCT GACGAAGGCG
GGCATCGCGT TGATCTTTTA TCTCCACGGG CTGGCGCTGT CGTTCGGCGC ACTGAAGGCG
GGTACGCTGC GCTGGCCGCT GCACGTCGTG GTTCAGGTGA CCACGTTCCT CGTTTTCCCA
TTGATCGGGC TGGGGCTGAT CACGCTGCTC GGCGAGCGCG TCTCGCCCGA GCTCCGGCTG
GGACTTTTTT ATCTCTGCGC GCTGCCGTCG ACGGTGTCGT CGTCGGTCGC GCTCACAGCG
GCGGCGCATG GCAACATCGC CGCGGCGCTG TTCAATGCGA CGCTGTCCAG CGTGCTCGGT
GTGTTCCTCA CGCCGCTGTG GGTGACGGTG GTGCTGCGCT CGCGCGGCGC AGCGCAGCCG
CTCGGTCCAG TGATGCTGGA CCTGACGATC TGGTTGATCC TTCCGTTGAT CCTCGGCCAG
ATCACGCGAC CGCTGCTCGG CCGCTGGGCC GAGAGAAACA AGCGCGTGAT CAACAAGGTC
GACCGGCTCA CGATTCTGCT GCTCGTCTAC ACGTCGTTCT GCGATTCGTT TCAGCAAGGC
GTGTGGTCGC ACCACGGCTG GGCGACACTG GCGCTGGTGC TGGCGATCGC GGCCGGGTTG
TTCACGCTGG TCATGGCGAT CACCGGCGGC GTGTCGCGCT GGCTCGGTTT CCCGCGCGAA
GACCGGATCG CGGCGATGTT CTGCGGTTCG AAAAAGACCC TCGCGTCCGG CGTGCCGATG
GCTCGGCTGA TCTTCGGGGC GCATCCCGGG ATTGGCCTGA TTCTGCTGCC GATCATGATT
TATCATCCGC TGCAACTTGT GATCTGCGGC GTGCTGGCGC AGCGTTGGGC TCATCGAACG
GAGGACGACG ACCATGGCCA TGCCCGCAGC ACCGGATGA
|
|---|
| Protein sequence | MRLKVDWFLA GMVAATALAW LFPEPGASGG WLYPDILTKA GIALIFYLHG LALSFGALKA
GTLRWPLHVV VQVTTFLVFP LIGLGLITLL GERVSPELRL GLFYLCALPS TVSSSVALTA
AAHGNIAAAL FNATLSSVLG VFLTPLWVTV VLRSRGAAQP LGPVMLDLTI WLILPLILGQ
ITRPLLGRWA ERNKRVINKV DRLTILLLVY TSFCDSFQQG VWSHHGWATL ALVLAIAAGL
FTLVMAITGG VSRWLGFPRE DRIAAMFCGS KKTLASGVPM ARLIFGAHPG IGLILLPIMI
YHPLQLVICG VLAQRWAHRT EDDDHGHARS TG
|
|---|
| |