| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Oter_3654 |
|---|
| Symbol | |
|---|
| ID | 6206956 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Opitutus terrae PB90-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010571 |
|---|
| Strand | - |
|---|
| Start bp | 4743473 |
|---|
| End bp | 4744642 |
|---|
| Gene Length | 1170 bp |
|---|
| Protein Length | 389 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 641693322 |
|---|
| Product | riboflavin biosynthesis protein RibD |
|---|
| Protein accession | YP_001820531 |
|---|
| Protein GI | 182415465 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0117] Pyrimidine deaminase
[COG1985] Pyrimidine reductase, riboflavin biosynthesis |
|---|
| TIGRFAM ID | [TIGR00227] riboflavin-specific deaminase C-terminal domain
[TIGR00326] riboflavin biosynthesis protein RibD |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.4777 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.510462 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATGAGTA CGACGACGAA CAATCACGAG ACCTTCATGC GACGGGCTTT GGAGGTGGCG
CGAAAAGGCT GGGGCGACAC GCATCCAAAC CCGATGGTCG GAGCGTTGAT CGTGGAGGAG
GGCCGTGTCG TGGCCGAAGG ATTCCACGCG CAGGACGGCG GGCCGCACGC GGAACGGCTG
GCTTTGTTGA ACCGCGGCAA GCCGCCGCGC GCGGGTGCGA CGATGTATGT CACGCTGGAG
CCCTGCTCGA CTTCCGGCCG GACCGGCGCG TGCACGGATG CGATCATCAG TTCGGGCATC
AAGCAGGTGG TGGTCGGCGC GACGGACCCG AACCCGGAGC ATTCCGGCAA GGGCTTCGAG
GTGCTGCGCG CTGCGGGGGT CGAGGTCATC CACGGCGTGC TGGAGCGCGA GTGCACGGAC
CTGAACCTGA TTTTCAATCA CTGGATTCAT CGCGCCACGC CGCTGATCGC GTCGAAGTCC
GCGGTGACGC TGGACGGCCG GATGGCGTGT CGCACCGGTG AATCGAAATG GATCACCGGC
GAACCGGCGC GCGCGAACGT GCACGTGTGG CGGCGGCTTT TCCCCGCGAT CGCCGTGGGC
GCGGGCACGG TGTTCAAGGA CAACCCGCGG CTGACGGCGC GGGTCGAAGG CCAGCCCGAG
TGGTGCCCGA TCCGCTTCGT ATTCGACGGA CTGCTGCGCA CGGTCGTCGA CAAGCAGTTG
CCTAAGCTCT ACACCGACGA ATTTCACAGC CGCACCGTGG TGGTGACAAC GCCACACGGC
GGGCTGGGCT ACGTGCGCAA ACTGCGCGAG ATGGGCGTGC AAGTGTGGGT GATCCCGTCG
CCGACGCAGC GCGTGCCGAT GTCGGAATTT CGAAAAAAAT GCGTGGAGGA ACGCGTCGCG
GGCGTGCTGT TCGAGGGCGG CGCGCAGCTC GTGAGCCACC TGCTGCAGGA GAAGCAGCTC
GACTATCTTT TCATTTATCG CGCGCCGGTG TTGTTTGCGG ACGATCGCGC GAAGCCGATG
TTCAACGGAC TGCGCACGGA GAAGCCGGTG AATGGCGTGC GGTTGTCGGA TGTGCGCAAC
GAAGTGCACG GCGACGACAC ACTCACGCGC GGCTGTGTGG AGTATCCGGC GCAGATGTTT
GTTGACGAGA CGACGTACAG CCTGGCGTGA
|
|---|
| Protein sequence | MMSTTTNNHE TFMRRALEVA RKGWGDTHPN PMVGALIVEE GRVVAEGFHA QDGGPHAERL
ALLNRGKPPR AGATMYVTLE PCSTSGRTGA CTDAIISSGI KQVVVGATDP NPEHSGKGFE
VLRAAGVEVI HGVLERECTD LNLIFNHWIH RATPLIASKS AVTLDGRMAC RTGESKWITG
EPARANVHVW RRLFPAIAVG AGTVFKDNPR LTARVEGQPE WCPIRFVFDG LLRTVVDKQL
PKLYTDEFHS RTVVVTTPHG GLGYVRKLRE MGVQVWVIPS PTQRVPMSEF RKKCVEERVA
GVLFEGGAQL VSHLLQEKQL DYLFIYRAPV LFADDRAKPM FNGLRTEKPV NGVRLSDVRN
EVHGDDTLTR GCVEYPAQMF VDETTYSLA
|
|---|
| |