| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Oter_3347 |
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| Symbol | |
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| ID | 6204329 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Opitutus terrae PB90-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010571 |
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| Strand | + |
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| Start bp | 4372937 |
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| End bp | 4374277 |
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| Gene Length | 1341 bp |
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| Protein Length | 446 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 641693012 |
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| Product | RNA polymerase ECF-subfamily sigma factor |
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| Protein accession | YP_001820224 |
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| Protein GI | 182415158 |
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| COG category | [K] Transcription |
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| COG ID | [COG4941] Predicted RNA polymerase sigma factor containing a TPR repeat domain |
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| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.691039 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCGACGA CGGATGTTCC GACGCAGCCC GCGACCGACG CGACGCCACC GCCGCCAGTG
GCGGCCGGCC CCGCGGAACT GGTTGAACAT TTCTTTCGGC ACGAAACCGG TCGGCTGCAT
GGCACGCTGA TCCGGCTGCT CGGCGTCCAA AATCTCTCGC TCGCCGAGGA TCTCGCGCAG
GAGGCAATGC TCCGCGCGCT GCGCACGTGG TCGATGGGCG GCGTGCCGCC GAATCCCTCG
GCCTGGATCA CGCGCGTGGC GATCAATCTC GCGCGCGACG CGCTGCGGCA TCAGCGGATG
TCCACCGGCA AGGAGTCCGC GATCGTCACC TACCTCGACC AGACGCGGCC CGGCTCCGCG
GCGCCCGCGG ATCCGGATCA GGAAATTCGC GACGACGCAC TGCGGCTGAT GTTCGTGTGC
TGCCATCCCT CGATCGCCGC CGATGCGCAG GTCGTGCTCG CGTTGAAGGT GCTGTGCGGA
TTCAGCACCG GCGAAATCGC GCAGGCGTTC CTCACCAGCG AGGCCGCGAT CGAAAAGCAG
CTCACGCGCA CGAAGCAGCG GATCGCGGAC GCCCGGATTC CCTTCGAGCT GCCGGCCGGC
ACCGATCTCG CCCCGCGGTT GGACGGCGTG CTGAGCGCAC TCTACCTGCT GTTCAACGAA
GGCTACAAGG CTTCCGCCGG CGAGCGCCTG TTGCGCGAGG AGTTGTGCGC CGAGGCGATC
CGGTTGGGCA CACTCGTCGT CGAGCATCCA GTGCTCGCCA CGCCGCGCGC GCAAGCGTTG
CTGGCGCTGA TGCTGCTCAC GGCAGCGCGG CTCCCCGGTC GGCTCGATCA GAACGGCGAG
CTACTGCGAC TCGACGACCA GGATCGCACC AAGTGGAACC AGCGCATGAT CGAACAGGGT
CTGGTGATGC TGGGTGCGGC GGCGCGCGGC GAGGAGCTCA GCGAATACCA CCTCGAGGCC
GGCATTGCGG CGTGCCACTG CGCCGCGACG GATTACGCTT CAACGGATTG GCCGCGGATC
CTGCGCCATT ACGATGAACT GCAGCGCATC AAACCGTCGC CGATCGTGGA TCTGAATCGC
GCGGTGGCCG TCGCCGAAGT GCACGGGCCG AAGGCGGGAC TCGACGCGCT CGCGGCGATG
CCGCGCCGCG AACGACTGGA CTCCTATTAT CTGCTGCACG CGGTGAGCGG GGAATTTCAC
TGGCGGCTAA ACCAGCGGCC GCAGGCGATC GCTTGTTTTC GGAAAGCACG CGACTTGGCG
CGCGTCGGTC CCGAACAACT CTATCTTGAT CGGCTGCTCG AGCGGCTCGC CGGCAGTACG
CCGCGGCGCT CGGAGGCGTG A
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| Protein sequence | MATTDVPTQP ATDATPPPPV AAGPAELVEH FFRHETGRLH GTLIRLLGVQ NLSLAEDLAQ
EAMLRALRTW SMGGVPPNPS AWITRVAINL ARDALRHQRM STGKESAIVT YLDQTRPGSA
APADPDQEIR DDALRLMFVC CHPSIAADAQ VVLALKVLCG FSTGEIAQAF LTSEAAIEKQ
LTRTKQRIAD ARIPFELPAG TDLAPRLDGV LSALYLLFNE GYKASAGERL LREELCAEAI
RLGTLVVEHP VLATPRAQAL LALMLLTAAR LPGRLDQNGE LLRLDDQDRT KWNQRMIEQG
LVMLGAAARG EELSEYHLEA GIAACHCAAT DYASTDWPRI LRHYDELQRI KPSPIVDLNR
AVAVAEVHGP KAGLDALAAM PRRERLDSYY LLHAVSGEFH WRLNQRPQAI ACFRKARDLA
RVGPEQLYLD RLLERLAGST PRRSEA
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