| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Oter_3334 |
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| Symbol | |
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| ID | 6206387 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Opitutus terrae PB90-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010571 |
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| Strand | - |
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| Start bp | 4358767 |
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| End bp | 4360203 |
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| Gene Length | 1437 bp |
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| Protein Length | 478 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 641693000 |
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| Product | galacturan 1,4-alpha-galacturonidase |
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| Protein accession | YP_001820212 |
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| Protein GI | 182415146 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG5434] Endopolygalacturonase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.473143 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.755781 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGTTTCCG CGGCCGGCGC GCGGCGATGG AGCGAGGAAC CGGTCAACGA TGAGCGAACC
GGCGCCGTCG CGCGCGACGG CCACAACCGC AGGCTCGGTC CCATGAAAAC CCCCTGGAAG
CGGCAGTACG TGCGCCTCGC CCTGGGCCTG CTGATGGCCG GACTGGCGAC TGGCAGCAGG
CCGTTCGACC TGCGCGCGGC CGAAGTCGAC GTGACGGCGG TCGAGCACGT GCGGCCGGCG
CTGCCGGTGA TTCCGGAGCG AACGTTCCGG CTCACGGACT TCGGGGCGGT GGGTGACGGC
ACGACGCTGA ACACAGAAGC GTTTGCGCGT GCGATCGCCG CGGTGGCCAA AGCCGGCGGC
GGCAAACTCG TGGTTCCCGC GGGAACGTTC CGGACCGGTC CGTTCGCATT GTGCTCGAGT
CTTGAACTGC ATCTCGAGGC GGGTGCGCTG ATCCAAGCCC CGGCGACGTT CGCCGACTGG
GGGCTGCCCG AGCCGACGAC GTTCAGCTCG CAGGCCGAAG TGAACGCGGC GGTGAAGCCG
GTGCCTCCAT TGATTCACGG TCGCAAGCTG CACGATGTTG CCATCACGGG CTCCGGCCAG
ATCGACGGCA ATGGCGCGCT GTGGTGGGCG TGGTCGGAAC GCGCCGCACG CGCTCAGCGC
GGACGGCTGG TCTACAAGCG CACGCACATG ATCATCATCG ACGGTTGTGA ACGACTGCGG
GTCGCGGATG TCACGCTGTC GAACTCAGCC ATGTTTCATC TCGTGCCGCG GCGGATCACC
GACCTGACGA TCGAGCGGGT GAAAGTCCGC GCGCCCGAGG AGGCACCGAA CACGGACGCC
ATCGATCCGG GTTCGGTTAC CAACGCTTGG ATTCATCACT GCGACATCGA CACGGGCGAT
GACAACATCG TGATCAAGTC CGGCGGCACG AATATCCTGA TCGAGGATTG TGTCATCAAG
CATGGCCACG GCATCTCCAT CGGTTCCGAG ACGACGGAGG GCGTTCGGAA CATGCTCGTC
CGGCGATGCA GCTTCGACGG CACGGACAAC GGCATCCGGA TCAAATCCAT GCGCGGCGCC
GGCGGCGTGG TGGAAAACAT CCGCTACACC GGCATCACCA TGAAGGACGT CGAGAACGCG
ATCGTGCTCG ATCTGACCTA CACGGATAAC AACCGGCCGA ATTTCCGCGG CGATCCGACG
AAAATCCCCG TGATCCGCGA CATCCTCATC GATCACGTGA CGGTCACCGG CTCGCTGAAG
GCGGGAAAGA TCGTGGGCCT GCCGGATAGC CCGATCTCGG GGGTGACGTT GCGCGACGTA
ACGATCCAGG CAGAGAAGGA TCTAGTGGTC AAAGATGCGG GCGCGCCGGT ATTCGAACGC
GTGACCCGGC AGATCGAGCC GGGTGTTGCC CCTAGAAAGC CGGCGTACGT TCACTAG
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| Protein sequence | MVSAAGARRW SEEPVNDERT GAVARDGHNR RLGPMKTPWK RQYVRLALGL LMAGLATGSR
PFDLRAAEVD VTAVEHVRPA LPVIPERTFR LTDFGAVGDG TTLNTEAFAR AIAAVAKAGG
GKLVVPAGTF RTGPFALCSS LELHLEAGAL IQAPATFADW GLPEPTTFSS QAEVNAAVKP
VPPLIHGRKL HDVAITGSGQ IDGNGALWWA WSERAARAQR GRLVYKRTHM IIIDGCERLR
VADVTLSNSA MFHLVPRRIT DLTIERVKVR APEEAPNTDA IDPGSVTNAW IHHCDIDTGD
DNIVIKSGGT NILIEDCVIK HGHGISIGSE TTEGVRNMLV RRCSFDGTDN GIRIKSMRGA
GGVVENIRYT GITMKDVENA IVLDLTYTDN NRPNFRGDPT KIPVIRDILI DHVTVTGSLK
AGKIVGLPDS PISGVTLRDV TIQAEKDLVV KDAGAPVFER VTRQIEPGVA PRKPAYVH
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