| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Oter_3293 |
|---|
| Symbol | |
|---|
| ID | 6207555 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Opitutus terrae PB90-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010571 |
|---|
| Strand | - |
|---|
| Start bp | 4310292 |
|---|
| End bp | 4311959 |
|---|
| Gene Length | 1668 bp |
|---|
| Protein Length | 555 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 641692959 |
|---|
| Product | malate dehydrogenase |
|---|
| Protein accession | YP_001820172 |
|---|
| Protein GI | 182415106 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0281] Malic enzyme |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.62653 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCCTCGA AAGACACTGG TCTCCAGCCC CATGGTGGTC CGAGCTATCC GCGCGGTCAT
GCGCTGTTGC TGGATCCGTT GTTGAACAAA GGCACGGCGT TCACCGAGGC CGAACGCGAC
GCCTTGGGGC TGCGGGGATT GCTGCCGCCG CACGTTTTCT CGATGGAGGA GCAGGTGAAG
CGCGTGATGG GCAACTTCCG CCGCAAGCCC GACGCCCTGG AGAAATACAT TTTTCTGACC
TCGCTGCAGA ACCGCAACGA GACGCTGTTC TACCGGCTCG TGCAGGAGAA TCTCGAGGAG
ATGATCCCGA TCATCTACAC GCCGGTGGTG GGACAGGCCT GCCTCGAATT CGGCGCGATT
TTCCGGCGCC CGCGCGGTCT GTATATCAGC ATTCGGGATC GGGGCCGCAT CGCCGACATT
CTGACCCACT GGCCGGTCAA CGACGTGCGG ATGATCGTGG TGACCGATGG CGAGCGGATC
CTCGGGCTCG GCGATCTCGG CGCCTTGGGC ATGGGCATTC CGATCGGCAA GCTCTCGCTG
TACACCGCGT GTGCGGGGGT GCATCCGGGC TACACGCTCC CCATCATGCT CGACGTGGGG
ACGGACAACA CGACGCTGCA TCACGATCCG CTCTACATCG GGTTGAACCA GCGTCGCGCG
CGCGGGGCCG AGTATGACGC GTTTCTCGAG GAGTTCGTGA CCGCAGTGGC GCACGCATTT
CCGAAGGCGC TGTTGCAGTG GGAGGATTTC GGCAACACGA ACGCCTTCCG ACTGCTCCAC
CAGTATCGCG AGCGGATCTG CAGCTTTAAC GATGACATCC AGGGCACCGC GGGCGTGGCG
CTTGCGGGAT TGCTGGGCAG CCTACGGATT TCCGGCGCCA AACTGCGCGA TCAACGGGTA
CTGTTCCTCG GCGCCGGCGA AGCGGGCACG GGCATCGCCG ACCTGCTGGT CGCAGCGATG
CGGGAGGAGG GGCTTTCGGA AGCCGAGGCG CGCCAGCGGT GCTGGTTCGT CGACTCGCAA
GGACTCGTGG TGCAGAGCCG GCTCGCGAAG CTGGCCGAGC ACAAGCGCCC GTACGCGCAC
GACCACGCTT TTGTCGCGAC GCTCGCCGAA GCGGTGAACG CGCTCAAGCC GACGGCGCTC
ATTGGCGTGT CGGGTCAGGC GCAGGCGTTC ACCGAGCCGA TCGTGCGACA GATGGCGGCG
TTGAACCGGC ATCCCGTCGT GTTCGCGCTG TCGAACCCGA CCTCCAAGGC GGAATGCACC
GCGGAGCAGG CTTACACGTG GACGGACGGC CGCGCGATTT TCGCCAGCGG CAGCCCGTTC
CCGACGGTGA AGCTCGGCGA GCGGGAGTTC GTGCCGGGGC AGGGGAACAA CGTTTACATC
TTCCCGGGCG TCGGTCTCGG CGCGCTTGTC GCCGAAGCCT CACAGGTGAC CGATCGGATG
TTCCTGCGCG GTGCGCGCAC GCTCGCGAGC CTCGTATCCG CGGAGGACAT CGCGCTGGGT
CGGGTGTTTC CGTCGCTTAC AAAGATCCGC GAAGTGTCGC TGGAGATCGC GACCGCCGTC
GCGGAGGAAG CGTTCAAGTC GGGACTGGCC CGACGCGCAC GCCCCGCCGA CCTGAAGGCT
GATATCGCGG CCCGGATGTT CGTGCCGGAG TATCAGAGCT ACGCGTGA
|
|---|
| Protein sequence | MASKDTGLQP HGGPSYPRGH ALLLDPLLNK GTAFTEAERD ALGLRGLLPP HVFSMEEQVK
RVMGNFRRKP DALEKYIFLT SLQNRNETLF YRLVQENLEE MIPIIYTPVV GQACLEFGAI
FRRPRGLYIS IRDRGRIADI LTHWPVNDVR MIVVTDGERI LGLGDLGALG MGIPIGKLSL
YTACAGVHPG YTLPIMLDVG TDNTTLHHDP LYIGLNQRRA RGAEYDAFLE EFVTAVAHAF
PKALLQWEDF GNTNAFRLLH QYRERICSFN DDIQGTAGVA LAGLLGSLRI SGAKLRDQRV
LFLGAGEAGT GIADLLVAAM REEGLSEAEA RQRCWFVDSQ GLVVQSRLAK LAEHKRPYAH
DHAFVATLAE AVNALKPTAL IGVSGQAQAF TEPIVRQMAA LNRHPVVFAL SNPTSKAECT
AEQAYTWTDG RAIFASGSPF PTVKLGEREF VPGQGNNVYI FPGVGLGALV AEASQVTDRM
FLRGARTLAS LVSAEDIALG RVFPSLTKIR EVSLEIATAV AEEAFKSGLA RRARPADLKA
DIAARMFVPE YQSYA
|
|---|
| |