| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Oter_3246 |
|---|
| Symbol | |
|---|
| ID | 6205485 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Opitutus terrae PB90-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010571 |
|---|
| Strand | + |
|---|
| Start bp | 4251004 |
|---|
| End bp | 4252311 |
|---|
| Gene Length | 1308 bp |
|---|
| Protein Length | 435 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 641692912 |
|---|
| Product | ABC transporter related |
|---|
| Protein accession | YP_001820125 |
|---|
| Protein GI | 182415059 |
|---|
| COG category | [G] Carbohydrate transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1134] ABC-type polysaccharide/polyol phosphate transport system, ATPase component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.224686 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.539755 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCCCACC CGGCCATTTC CATCCGCAAC ATCTCAAAAA AGTACCGTCT CGGTCTCATC
GGCATGACCA CGCTGCGCGA CGAGCTGCAG CGGCGCTGGG CTCGGCTGCG TCGCGACGAT
CTCGCGCTGG GCGTAAAGAA CAACGTCCGC AATCGCGGCG CCGAATTCTG GGCCTTGCGC
GACATCTCCT TCGACGTCCA GCCCGGCGAG GTCGTGGGCC TCATCGGCCG CAACGGCGCC
GGCAAGAGTA CCCTGCTCAA GGTACTCAGC CGGATTACCG AGCCCACGCT CGGCGAAATC
CGCTTGCGCG GCCGCGTCGC CAGCCTGCTC GAGGTCGGCA CCGGCTTCCA CCCGGAGCTC
AGCGGCCGCG AAAACATTTT CCTCAACGGC GCCGTGCTCG GCATGACGCG CGCCGAGACC
CGGCGGAAGT TCGACGAGAT CGTGGAGTTC TCCGAAATCG GCAAGTTCCT CGATACGCCC
GTCAAGCGTT ACTCGAGCGG CATGTATGTC CGGCTCGCCT TCGCCGTCGC CGCGCATCTC
GATCCCGAGA TCCTGATTGT CGACGAGGTG CTCGCGGTGG GCGACGTCGC CTTCCAGCGC
AAGTGCCTCG GCAAGGTGAA GGAGATTTCG CAGGGCCAGC ACCGCACGGT GATCTTCGTC
AGCCACAACA TGAACGCGGT GGAGAACATC TGCACCCACG GCGTCATGCT GCGCAACGGC
CAACTCGTGC GCGAGGGCAG CGACGTCCGC GACATCATCC GGCAGTATCT CGCCGACGGG
CTCAATCCCG ACCAGGAGCC GGTCTGGCAG AACGACACGC ACCAACTGAA GAACGACTAC
TGTCGGATCG ATCGCTTCCT GCTCGCCGAT CCGCAGGGCG ACCCGCTGCG CGAAACGGTG
CGCAACGACA CCTCCGTGAG CGTGATCATC GAGGGCGAAA TCCTGAAGCC GAATCCGAAC
CTCCAGTGCG GCTACGGGCT TTTTAGCGAT GAGATGGACC TGCTCTACAT CAGCACGCAT
CTCGACCAGC CGGAATCGGA ATGGGTCGAG CTGCCGCGCG GCTCCTTCCG GCTCACCACG
AAAATCCCTC GCCGTTTTCT GAACGAGGGC CGCTATCACG TCGGCTTGTT CTTCGCGTTG
AATCGCCGCG AAAAACTCTG CGAGCCCGGC GGCAAGGGCT CGCCGATGCT CACGTTCGAG
ATCCGGGGCG GGCTCAGCGA TTCGCCGGCG TTCATGTCGC GGCGCTCGGG TTTCCTCAGT
CCGATCTTGG AATGGGAGAC GCGCACCGGC GTCGAGCTGC TGGCCTGA
|
|---|
| Protein sequence | MSHPAISIRN ISKKYRLGLI GMTTLRDELQ RRWARLRRDD LALGVKNNVR NRGAEFWALR
DISFDVQPGE VVGLIGRNGA GKSTLLKVLS RITEPTLGEI RLRGRVASLL EVGTGFHPEL
SGRENIFLNG AVLGMTRAET RRKFDEIVEF SEIGKFLDTP VKRYSSGMYV RLAFAVAAHL
DPEILIVDEV LAVGDVAFQR KCLGKVKEIS QGQHRTVIFV SHNMNAVENI CTHGVMLRNG
QLVREGSDVR DIIRQYLADG LNPDQEPVWQ NDTHQLKNDY CRIDRFLLAD PQGDPLRETV
RNDTSVSVII EGEILKPNPN LQCGYGLFSD EMDLLYISTH LDQPESEWVE LPRGSFRLTT
KIPRRFLNEG RYHVGLFFAL NRREKLCEPG GKGSPMLTFE IRGGLSDSPA FMSRRSGFLS
PILEWETRTG VELLA
|
|---|
| |