| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Oter_3224 |
|---|
| Symbol | |
|---|
| ID | 6204325 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Opitutus terrae PB90-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010571 |
|---|
| Strand | - |
|---|
| Start bp | 4210023 |
|---|
| End bp | 4211357 |
|---|
| Gene Length | 1335 bp |
|---|
| Protein Length | 444 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 641692891 |
|---|
| Product | Alpha-N-arabinofuranosidase |
|---|
| Protein accession | YP_001820104 |
|---|
| Protein GI | 182415038 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG3507] Beta-xylosidase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.136595 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 7 |
|---|
| Fosmid unclonability p-value | 0.135367 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGGAG CCCGCATCGG CATCGGACTC GCCGCCCTGT GCGTCGTCGG CTCCGCCTTC
GGCACCAATC CGCTGATCCT GGACCAGTTC ACCGCGGATC CAACGGCGCG CGTCTTCGAG
GGCAAGGTCT ACGTTTACCC ATCGCATGAT ATCCTCGCCA CCGAGGGCCG GGGCCGGCCC
GGCTGGTTCT GCATGGAGGA CTATCACGTC TTCTCCTCGG TAAATCTCAC CGATTGGACC
GATCACGGCG TGATCCTCAC GCAGACGGGC GTCGATTGGG TCAACGCTGA CAGCTACAGC
CTGTGGGCGC CCGACTGCAT AGCTCGCGAC GGCAAGTACT ACTTCTATTT CCCCGCAATT
CCGAAATCAG GCGAAAAGGG CTTCCGAATC GGCGTCGCGG TCGCGGACCA GCCCGCGGGG
CCCTTCAGGC CGGAACCGGC GCCGATCGAA GGCGTGCGTG GGATCGATCC CTGCGTGTTC
ATCGATCACG ACGGCACCCC TTATCTGTAC TATTCCCACC GCAAGATCTT CGTCGCGAAA
CTGCAGGACA ACATGCGCCA GCTCGCCGGT CCCGTGCAGA CGATCGCGAA CCTGCCGGCG
AAGGGGCTGA TCGAGGGGCC GTTCGTTTTC GAGCGAAACG GGATCTACTA TCTCACCTAT
CCGCACGTGG AGAATCGGAT CGAGCGGCTG GAATACGCGA TCGCCGATCA CCCGCTCGGT
CCGTTCAAGC CCGCCGGCGT CATCCTCGAC GAATCCGCCA GTGGTTGCTG GACCGTGCAT
CAGTCGATCA TCGAGTACCG CGGCCAATGG TACTTGTTCT ATCACGACCG CGATCTTTCG
CCGAACTTCG ACAAGGCCCG GTCGATTCGC GCCGACCGGC TGTTCTTCAA CGAGGATGGC
ACGATCCGCA AAGTCATTCC CACGCTGCGC GGCGTGGGTC TCGTTGCCGC CGACGGCGAA
ATCCAGATCG ACCGCACCAG CGCCACCAGT GGCGCTGCCG TCGTGGTGTC GTTCCTGAAC
GCCGCGAGCC CTGCCGCGGG CTGGAAACTC GCGCTGAACG ACGTTGGCGC GTGGGTCCGC
TTCGACCAGG TGGATTTTGC GCAAGGCGGG CAGAAGCTGA TGCAGGCGCG GTCGCGGTCC
GCGTCCGGCG GTACCATCGA AGTCCGGCTC GACGCGATTG ACGGCCCGGT ACTGGCCCGG
CTCCAGATCG ATCCAGGTAC CGAATGGACG ATGGTATCCT CGCCGGTTCA CCACGTTTCC
GCCGGCGTGC ACGATCTGTT TGCAACCCTC GTGGGCGGCC ATCCGGTCGA ACTCGACTGG
CTCCGGTTCG AGTGA
|
|---|
| Protein sequence | MSGARIGIGL AALCVVGSAF GTNPLILDQF TADPTARVFE GKVYVYPSHD ILATEGRGRP
GWFCMEDYHV FSSVNLTDWT DHGVILTQTG VDWVNADSYS LWAPDCIARD GKYYFYFPAI
PKSGEKGFRI GVAVADQPAG PFRPEPAPIE GVRGIDPCVF IDHDGTPYLY YSHRKIFVAK
LQDNMRQLAG PVQTIANLPA KGLIEGPFVF ERNGIYYLTY PHVENRIERL EYAIADHPLG
PFKPAGVILD ESASGCWTVH QSIIEYRGQW YLFYHDRDLS PNFDKARSIR ADRLFFNEDG
TIRKVIPTLR GVGLVAADGE IQIDRTSATS GAAVVVSFLN AASPAAGWKL ALNDVGAWVR
FDQVDFAQGG QKLMQARSRS ASGGTIEVRL DAIDGPVLAR LQIDPGTEWT MVSSPVHHVS
AGVHDLFATL VGGHPVELDW LRFE
|
|---|
| |