| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Oter_3218 |
|---|
| Symbol | |
|---|
| ID | 6204404 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Opitutus terrae PB90-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010571 |
|---|
| Strand | - |
|---|
| Start bp | 4197800 |
|---|
| End bp | 4200196 |
|---|
| Gene Length | 2397 bp |
|---|
| Protein Length | 798 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 641692885 |
|---|
| Product | Alpha-L-fucosidase |
|---|
| Protein accession | YP_001820098 |
|---|
| Protein GI | 182415032 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG3669] Alpha-L-fucosidase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.266545 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.296598 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAACAT TCCGCCTGCT CGCCGCCATC TGGTTGTTGC CCGCCTGCGG ATTCGCCCAA
ACCGCTCCCG CGCCCTACCA ACCGAGCTTC GAATCGCTGG AGCGCGCCAA CCCCGCACCC
GAGTGGTTCA AGGACGCCAA ATTCGGCATC TACTTCCACT GGGGCGTCTA CTCCGTCCCC
GCCTTCGGCA ACGAGTGGTA TCCGCGCACG ATGTATCTCG ACGGCACCGC CGAGCACCGG
CACCACGTCG AACGCTACGG TGATCCGCGC GAGTGGCCCT ACCACAACTT CATCGTCGGC
GCGCGCGACA AGGAGGGTCG GTTCGTGCAG TTCGCGCCCA AGCTGAAATC CGCGGGCGGC
CACTTCGATC CCGCGGAGTG GGCGCAGCTG TTTGCCGATG CCGGCGCGAA ATTCGCCGGC
CCGGTGGCAG AGCACCACGA CGGGTTCTCG ATGTGGGCCA GCAAGGTGAA TCCGTGGAAC
GCAAAGGATC AGGGCCCGAA GCTCGACCTC GTCGGGCTGT TCACGGAGGC GATTCGCGCG
CGCGGGCTGA GAACCGTCCT GTCCATGCAC CACGCCTACA ACATCACGGG CTTTTACGAA
GGCGTGCCGC CGCAGCAGGA TCCAAAATTA CAGATCCTCT ACGGCCAGCA AGGCAAGGAG
CGGAACGAGG CGCTGTGGCT GGCGAAGCAC AAGGAAATCA TCGACGGCTA CCGACCGGAC
ATCATCTGGC AGGACTTCAA CCTCCACAAG ATCTCGCCGT CCGTCCTGCT CGAGTTCCTC
GCCTACTACT ACAACCAGGC CGCCGGATGG AAGAAGGAGG TCGTCGCCAC CTACAAGGAT
GGTCTGAATC CGCGCTGCGC CGTGCTCGAC TACGAACGCG GCGGCCCGGC CGACACCGTG
GAGAAGTATT GGCTGACCGA CGACGCCATC AGTTCTTCGA GTTGGTCCTA CACGGAGGGC
ATCAGCTACT ATTCCACGAA GCAGATCCTG CACGGATTCA TCGATCGCAT CAGCAAGAAC
GGCAATCTCC TGCTCAACGT CTCACCTCGC GCCGACGGCA CGATCCCGCA GGAGCAGAAA
AACCTGCTGC TCACCATGGG GGGCTGGTTG AAAAAATATG GCGAGGCGGT CTACGCCACG
CGCGCGTGGG ACCTCTACGG CGAGGGCCCC ACCAAGATGG GCGCCGCGCA CGGCGTGATG
GGCCCGCCAA GGGAAGGCAC TGCGCAGGAT GTCCGCTACA CTCGGGCGAA GGACAACTCC
ACGCTCTACG CGATTCTGCT CGGCTGGCCG GACGGCCAGT CGGAGTTCGT CCTGCGCGCA
TTGTCTTCGG AACGCATCGA CGGTCGCCGG CTGAAGTCGG TCGCCCTCAT CAACGGTCGC
GCCGGCGCCT ACCTGCCGCT GGAGCACACA CAGGACGCGC AGGGCTTGCG CGTCCGCCTG
CCGGCCCGGC CGTTCGACGA ACTGGCCTAC GTGCTCAAGC TCGATTTCGC CGGCGGCATT
CCGGCCTTCG ACAACTTTGC CGCGTTCGAA GGCGCGGAGT TTTATCACCT CGTGCCTGGC
TCCGACTCCG GCGATCTGGT CCTCGGCGCC GACCTCACAC TCACCACCGC GCGAAAGGCG
CCCGCGAACC AGTGGAAAGT CGAGCATCTC GGCAAAGGGG TGCACCGGCT CCTCAACCGC
GAAGATCCGC GCACGGCTCT CGCTTGGGAT GGCACGCGTC GGATCTTCGT GCGCGTGGCT
GTCACCGGCG CGGACACTCA GCTTTGGAAA ATCGCCCGTG CGCCCGGCGG GCTGGTCACG
CTCGCCAACG TGTCGGATCC CACCGCCCGG CTCTCCCTCT CGGCCGCTCC GGCCGCTGGC
ATCGGTGCCG CGCTCGCGCC TGCCGCTGAT CCGCTGCTCG CGCGCTGGCA GCTCCGCGAG
GTCTGCGACA CGCCCCAGCA AGCGTTCAAG CCCCATGCCC TCCCCGGCGT GGTCGAAGCC
GAGGACTTCG ACGTCGGCTG CCCTGGCGAC GCCTATCGCG ACCGCGATGA GATCAATGAA
GGCGGACAGT ATCGGCCGGA CCAAGGCGTC GACCTCGGCG AATGCAGCGC CGGCGGCTAC
ACCCTTGGCT GGACCCACGC CGGCGAATGG ACCGCGTATA CCGTGACCGT TGACGCCTCC
GCTTCCTACG GCGTTTCGTT TCACGTCGCC ACCGGCAATC CCGGAGCAAA ATTCCATCTC
GAGTCCGACG GGGTCGACCT GACCGGCACC ATCGACGTGC CCAACACCAA GGGGTTTCAG
AATTGGACTA ATGTTAAGCA CACCATCCAC CTCGACGCGG GCCAGCACGT GCTGAAGGTC
GTCATCGATG GCGACTACGT GAACCTGGAC AAAATGGACT TCGAGAAATC CGAATGA
|
|---|
| Protein sequence | MKTFRLLAAI WLLPACGFAQ TAPAPYQPSF ESLERANPAP EWFKDAKFGI YFHWGVYSVP
AFGNEWYPRT MYLDGTAEHR HHVERYGDPR EWPYHNFIVG ARDKEGRFVQ FAPKLKSAGG
HFDPAEWAQL FADAGAKFAG PVAEHHDGFS MWASKVNPWN AKDQGPKLDL VGLFTEAIRA
RGLRTVLSMH HAYNITGFYE GVPPQQDPKL QILYGQQGKE RNEALWLAKH KEIIDGYRPD
IIWQDFNLHK ISPSVLLEFL AYYYNQAAGW KKEVVATYKD GLNPRCAVLD YERGGPADTV
EKYWLTDDAI SSSSWSYTEG ISYYSTKQIL HGFIDRISKN GNLLLNVSPR ADGTIPQEQK
NLLLTMGGWL KKYGEAVYAT RAWDLYGEGP TKMGAAHGVM GPPREGTAQD VRYTRAKDNS
TLYAILLGWP DGQSEFVLRA LSSERIDGRR LKSVALINGR AGAYLPLEHT QDAQGLRVRL
PARPFDELAY VLKLDFAGGI PAFDNFAAFE GAEFYHLVPG SDSGDLVLGA DLTLTTARKA
PANQWKVEHL GKGVHRLLNR EDPRTALAWD GTRRIFVRVA VTGADTQLWK IARAPGGLVT
LANVSDPTAR LSLSAAPAAG IGAALAPAAD PLLARWQLRE VCDTPQQAFK PHALPGVVEA
EDFDVGCPGD AYRDRDEINE GGQYRPDQGV DLGECSAGGY TLGWTHAGEW TAYTVTVDAS
ASYGVSFHVA TGNPGAKFHL ESDGVDLTGT IDVPNTKGFQ NWTNVKHTIH LDAGQHVLKV
VIDGDYVNLD KMDFEKSE
|
|---|
| |