| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Oter_3147 |
|---|
| Symbol | |
|---|
| ID | 6205515 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Opitutus terrae PB90-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010571 |
|---|
| Strand | - |
|---|
| Start bp | 4088536 |
|---|
| End bp | 4091238 |
|---|
| Gene Length | 2703 bp |
|---|
| Protein Length | 900 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 641692813 |
|---|
| Product | DEAD/DEAH box helicase domain-containing protein |
|---|
| Protein accession | YP_001820027 |
|---|
| Protein GI | 182414961 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1201] Lhr-like helicases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.0156392 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.41345 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTGTTCA CCCGCGTCAC TTCACCGGCG TTCACCGAAT CGCGACTCTA TGCCGCGCTC
CACCCCGACC TCGCCGCTTG GTTCCGCCGC CGCTTCGCCC ACTTTTCTCC CGCCCAGCTC
CACGCCGTGC CTGAGGTCCT CGCCGGGAAC TCGCTCCTGC TCACCTCTCC GACCGGCAGC
GGCAAAACCC TCGCCGCGTT TCTGTCCGTG TTCGACTGGC TCGCGCGGGC GCGTGATCGC
GGCGAACTGC CGAACGGGAT CGTCGCCGTC TACGTGTCAC CATTGCGCGC CCTGGCCTAT
GATCTCCGCA AAAACCTCGC GGAGCCCGTG CGCGAGCTCG GCTGGGACTG GCTGCGCGTC
GGCGCCCGCA CCGGAGACAC CTCGCCCGCA GAACGCGCAG CGCAGCGGCG CAAGCCGCCG
CACATTTTCG TCACCACGCC CGAGAGTCTC ACGCTGATGC TCAGCCAACC GGGCTGGATC
GCCGCGTTCA CCTCCACGCG TTTCCTCATC GCCGACGAGC TTCACGCGCT CGCCGAAAAC
AAACGCGGCG CGATGCTCGC CGTCGCCGCC GAGCGGCTGG AGGAATTTCC GATTGCCGAA
CGTCGATCGC CGAACGTCCC AGCGCCTCCA CCCCATGTTC CGGGAGATCC GACCGCTAGT
TCACAATCGG CCATCGAAAA TCAGAAATCG AAAATCATCA GAATCGGTCT TTCGGCGACG
GTCGCCCCGC TCGAAACCGT CGCAGCGTTC CTCGTCGGTC CCGGCCGTCC GTGCCGGATC
GCCGAGGTGA CGCAGACCAA GCCGGCGAAG ATCGAGGTTT TCTCGCCGCT GCGCGAGCAC
GCCTATCCGC CCGCCGGCTA CACGGCCACC CGTGTGCTCG CCGAACTCAG CGTGCTCCTC
GAAAAGCACA AGACCACCCT CGTGTTCACC AACACGCGCA GCGGCGCGGA ATCGATCGGG
CTTCGGTTGA AGCAGCTGCG GCCCGAACTC AGTGACTTGA TCGAGGTGCA TCACGCCTCG
CTCGATCGTG GCGTGCGGCT GGAGATCGAG GATCGGCTGA AACGCGGCGA GCTGCGCGCG
GTGGTGTGCT CGACCTCGCT CGAGATGGGC ATTGATATCG GCTCGATCGA CGTGGTGGTG
ATGGTGTCGG CGCCGAAAGG CGTGTCGCGC GCCCTGCAGC GCATCGGGCG CTCGGGCCAC
TCGATGGGCC GGATCAGCCA CGGGATTCTC GTCGCCAGCA ATATCAACGA CCTCGCCGAA
TGCGCCGTCA CCGCGCGGAT GATGGCGCGG CGCGAGCTCG AGCCGGTGAA GATTCACGAG
AACCCGCTCG ACGTGCTGGC GCAGACGCTG GTCGGGCTGG CGATTTTCGG CAGTGAGACG
CCGGACGAAG CGTTCGCGCT CGTGCGCCGC AGTTATCCGT TCCGCGACCT GCCCCGCGCC
ACGTTCGAAC GGGTGCTCCG CTATCTGCGC GGCGGCGGCG TTTCGCTCGA GCGCAACTAC
GAAAACGTCT TCGGCAAGGT GCGCGTTGAT GCCAGCGGCC AGCTCGTCCT CACCTCGCCG
CGCGTCGCGC GCAGCTTTTA TCAGAACATC GGCACGATCA ACACCGAGAG CATGGTGCAG
ATTCGGCTCG GCCGCCGAAA CCTCGGGCAG GTCGAGGAAT CGTTCATGCG GGGCCTGCGC
CCGGGCGACG TCTTCGTGCT TAACGGACGC TGCGTGCGGC TGGTGAAAAC CCATTTGCTC
AGTGCGCAAG TCGTGCGCGC CGACCACGCG CTGCCGACGG TTCCGCGCTG GTATGCGAAC
AAGATGCCAC TCGCCTCCGG GCTTGCCGCC GAGGTCGTGC GGCTGCGGAC GGAAGTGGCG
AAACGGCTTG GTGGGAGCGC GGGCGTCCCG CCCGCCTCCG GCCAACCCGC GGGCGAGACG
CCCGCGCTCT CATGGCTTCG CTCCGAATAC GGCCTCTCCG CCGCGAACGC CCGTGCGCTG
ATCGATCATT TCTCGTTGCA GGCACAGATC TCCGCGATTC CGACGGCGGG CGTGTTCCTG
ATCGAGCGCT ACCGCGAGGG CGACCTGCTC CACTACTTTT TCCACGCGCT CATCGGCCGG
TCCGCGAACG ACGCACTGTC GCGCATCGTG GCGCAACGCG TGCAGTCGCT CAAAGGTGGC
AACGCGCTCG TGACCATCGA CGATTACGGG TTCCTGCTCA GCCTGCGTTC GTTCCAGGCG
ATGGAGGAAC CGGAACTGCG TACACTGCTG GTACGCGACG GCGCCGAGGA CGCGCTGCGG
CTCGCGCTCG CCGATGCCTC GCTCGTGAAA TGGCAATTCC GCGGCGTGGC GCAGACCGGA
CTCATGGTGC CGCGGCGGGT GCACGGCGTC GAACGCGGCA CGCGCATGCT CCAGTGGAGC
GCCGAAATCA TCTTCGAAGT GCTGCGCGAG CATGAGCCGG ATCACCCGCT GCTGCTCGAA
GCCTACGCCG AGGCGACATT GCGTTTTCTC GATCTGCCCC GCGCGCTTGG CTTTCTCGAG
CAAGTCGACC GCCTGCGCTG GGACATTCGC GATCTACCCC GGGTGAGCCC GTTTTCCTTC
GGGATCTACG TCAGCAAGAT CAAAGAAACG ATGACCCTTG AAGATCCCGA GACGACGATT
GAGCGTCTCT ACCATGCAAT GTACGGCGCC AACGCACCCA CCGCGGCTTC AAGTCCGACC
TGA
|
|---|
| Protein sequence | MLFTRVTSPA FTESRLYAAL HPDLAAWFRR RFAHFSPAQL HAVPEVLAGN SLLLTSPTGS
GKTLAAFLSV FDWLARARDR GELPNGIVAV YVSPLRALAY DLRKNLAEPV RELGWDWLRV
GARTGDTSPA ERAAQRRKPP HIFVTTPESL TLMLSQPGWI AAFTSTRFLI ADELHALAEN
KRGAMLAVAA ERLEEFPIAE RRSPNVPAPP PHVPGDPTAS SQSAIENQKS KIIRIGLSAT
VAPLETVAAF LVGPGRPCRI AEVTQTKPAK IEVFSPLREH AYPPAGYTAT RVLAELSVLL
EKHKTTLVFT NTRSGAESIG LRLKQLRPEL SDLIEVHHAS LDRGVRLEIE DRLKRGELRA
VVCSTSLEMG IDIGSIDVVV MVSAPKGVSR ALQRIGRSGH SMGRISHGIL VASNINDLAE
CAVTARMMAR RELEPVKIHE NPLDVLAQTL VGLAIFGSET PDEAFALVRR SYPFRDLPRA
TFERVLRYLR GGGVSLERNY ENVFGKVRVD ASGQLVLTSP RVARSFYQNI GTINTESMVQ
IRLGRRNLGQ VEESFMRGLR PGDVFVLNGR CVRLVKTHLL SAQVVRADHA LPTVPRWYAN
KMPLASGLAA EVVRLRTEVA KRLGGSAGVP PASGQPAGET PALSWLRSEY GLSAANARAL
IDHFSLQAQI SAIPTAGVFL IERYREGDLL HYFFHALIGR SANDALSRIV AQRVQSLKGG
NALVTIDDYG FLLSLRSFQA MEEPELRTLL VRDGAEDALR LALADASLVK WQFRGVAQTG
LMVPRRVHGV ERGTRMLQWS AEIIFEVLRE HEPDHPLLLE AYAEATLRFL DLPRALGFLE
QVDRLRWDIR DLPRVSPFSF GIYVSKIKET MTLEDPETTI ERLYHAMYGA NAPTAASSPT
|
|---|
| |