Gene Oter_3134 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagOter_3134 
Symbol 
ID6204991 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameOpitutus terrae PB90-1 
KingdomBacteria 
Replicon accessionNC_010571 
Strand
Start bp4078971 
End bp4079843 
Gene Length873 bp 
Protein Length290 aa 
Translation table11 
GC content67% 
IMG OID641692800 
ProductECF subfamily RNA polymerase sigma-24 factor 
Protein accessionYP_001820014 
Protein GI182414948 
COG category[K] Transcription 
COG ID[COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog 
TIGRFAM ID[TIGR02937] RNA polymerase sigma factor, sigma-70 family
[TIGR02957] RNA polymerase sigma-70 factor, TIGR02957 family 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones11 
Fosmid unclonability p-value0.804493 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCGAGG ACTTCCATTC CAGCCGACCG CGCTTGTTCG GCATCGCGTA TCGGATGTTG 
GGCAGTGTGG CGGAGGCCGA GGACATGGTG CAGGAAACTT ATCTGCGCTG GCAGCGGCAG
GAGCGTACCT CGGTCGAGGA ACCGGCCGCG TGGTTGGTCA CGACGGTGTC GCGGCTTTGC
ATCGACGAAC TGCGTTCCGC GCGGCGGCGG CGCGAAGAGT ATGTGGGCAC CTGGCTGCCG
GAGCCACTGC TCGACACGTC GCTGCTCGCA CCCGATCAGG CGGCGGCGCG GACGGATTCG
CTCAACCTGG CATTCCTGCT GATGCTCGAA ATGCTCGAGC CGGTGGAACG CGCGGTGTTT
CTTCTGCGCG AGGCGTTCGA TTATGATTAC GCGGCGATCG CCCGGATCGT GGCGAAGTCG
GAGGCAAACT GCCGCCAGAT GGTCAGTCGC GCAAAAACGC GGCTGCGGGA TCAACCTGCG
CCCGCCGGCC CGCCCAGCGA ACAGGCGCAA GCCGTCGTAC AACGCTTCAT GGCCGCCTGG
GTGGCGGGCG ACCTGCCCGC GCTGCTCCGG TTGCTGAGCG AGGACGTCGT ACTTTACGCG
GACGGCGGTG GGCGCGTGCG CTCGGCGATT CGGCCGATCC ACACGGCAGC TCAGGTGGGC
CAGTTCCTCG TCGAGATTCG CCAGCGCTCC GTCGAAGGCG CCGAATTCTC GCTGGTGTCA
GTCAACGGCG ACGTCGGCGT GTGGATGCGC CGGCCGGATG GGATCGTCAG CGTCACCGCG
TATCGAATCG ACGGCGGGCG GATCCATTCG ATCTACGCCG TCGTGAACCC CGAGAAGCTC
CAGCATGTGG CCGCTCCGCG TCCGGTCGGG TGA
 
Protein sequence
MSEDFHSSRP RLFGIAYRML GSVAEAEDMV QETYLRWQRQ ERTSVEEPAA WLVTTVSRLC 
IDELRSARRR REEYVGTWLP EPLLDTSLLA PDQAAARTDS LNLAFLLMLE MLEPVERAVF
LLREAFDYDY AAIARIVAKS EANCRQMVSR AKTRLRDQPA PAGPPSEQAQ AVVQRFMAAW
VAGDLPALLR LLSEDVVLYA DGGGRVRSAI RPIHTAAQVG QFLVEIRQRS VEGAEFSLVS
VNGDVGVWMR RPDGIVSVTA YRIDGGRIHS IYAVVNPEKL QHVAAPRPVG