| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Oter_3132 |
|---|
| Symbol | |
|---|
| ID | 6205422 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Opitutus terrae PB90-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010571 |
|---|
| Strand | - |
|---|
| Start bp | 4075930 |
|---|
| End bp | 4078155 |
|---|
| Gene Length | 2226 bp |
|---|
| Protein Length | 741 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 641692798 |
|---|
| Product | isocitrate dehydrogenase, NADP-dependent |
|---|
| Protein accession | YP_001820012 |
|---|
| Protein GI | 182414946 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG2838] Monomeric isocitrate dehydrogenase |
|---|
| TIGRFAM ID | [TIGR00178] isocitrate dehydrogenase, NADP-dependent, monomeric type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.405756 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCCGCCA CACCGACCAT CATCTACACC AAGACCGACG AAGCCCCCGC CCTCGCGACC
TATTCGCTCC TGCCGATCGT GCAGGCCTTC ACGAAGCATG CGGGCATCGC CGTCGAAACG
CGCGACATCT CACTCGCGGG CCGGATCCTG GCGGCGTTCT CCGACCTGCT GCCCGCGAAC
CAGCGGGTGG CCGATGCGCT GGCCGAGCTC GGCGCACTCA CGCTCAAACC GGAGGCGAAC
ATCATCAAGC TTCCCAACAT CAGCGCATCC GTCCCGCAGC TTAAGGAAGC GATCGCCGAA
CTGCAGGCGA AGGGCTTCGC CCTGCCCGAT TATCCCGAGT CGCCGAAATC CGACGCCGAG
AAGGACGCCA AGGCGCGCTA CGATCGGGTG AAAGGCTCGG CCGTGAACCC GGTCCTGCGC
GAAGGCAACT CGGACCGCCG CGCGCCGAAG GCGGTGAAGG ACTACGCGCG CAAGCATCCG
CATTCGATGG GCGCGTGGTC GCCGACCTCC AAGACTCGCG TCGCCACGAT GGGCCGCGAC
GATTTTTACG CGAACGAGAA GTCCGTGACG GTCCCCGCGG CGACCACCGT GCGGATCGAA
TTCGAGTCAA CCGACGGCAA GGTCACCGTG CTCAAGGACA AGCTCGCACT GCTGGCGGGT
GAGATCATCG ACGGCACGTT CATGAGCCGC AAGACGCTCG ACAGCTTCCT CGAGCAGCAG
GTGGCGATCG CGCGGCAGGA CGGCGTGCTG TTTTCTGTTC ACCTCAAGGC GACGATGATG
AAGGTGTCGG ACCCGATCAT CTTCGGCCAT GCGGTTCGCG CCTACTTCAA GGAGCTGCTC
GCCAAGCATG CCGCCACGTT CGCCGAGCTC GGCGTCGATC TGAACAACGG CTTCGGCGAT
CTCGTCGCGA AATTGGAGAA GCTGCCGCCG GCGAAGAAGG CCGAGATCGA GGCCGACATT
CGCGCGACCT ACGCGGCCGG TCCCGCGGTG GCGATGGTGA ACTCCGATCA GGGCATCACC
AATCTCCACG TGCCGAGCGA CGTCATCGTC GACGCTTCGA TGCCCGCGAT GATCCGCGTG
GGCGGCAAGA TGTATGATGC CAACGGCAAG CTGCAGGACA CCCTCGCCGT GATCCCGGAC
AGCAGTTACG CGGGCGTTTA CCAGGCCACC ATTGAGTTCT GCAAAAAGCA CGGCGCCTTC
GATCCGCGGA CGATGGGCTC GGTCCCGAAC GTCGGGCTCA TGGCCCAGGC GGCGGAGGAG
TACGGCTCGC ACAACAAAAC CTTCCACCTT CCGTCGAACG GCACGGTGCG CGTGGTGGAC
GCGGCGGGTC GCGTTTATCT GGAGCACGCG GTCGCCGCGG GCGACATCTG GCGGGCGTGC
CAGGCGAAGG ATGCGCCGGT CCGCGATTGG GTGAAGCTCG CGGTAAACCG CGCACGGCTC
AGCGCGACGC CCGCGATCTT CTGGCTCGAC GAAAAGCGCG CCCACGACGC GCAGCTCATC
GTCAAGGTGA AGGCCTACCT CGCCGATCAC GACACGACCG GGCTCGACAT CAAAATCCTT
CCGCCCGCGG CGGCGTGCAC CGCCACGCTG GAGCGGCTCA AGGCCGGACA GGACACCATT
AGTGTCACCG GTAATGTGCT GCGCGATTAT CTCACCGACC TCTTTCCCAT CCTCGAAGTC
GGCACGAGTG CGAAGATGCT TTCGATCGTG CCGCTGATGA AGGGCGGCGG GCTGTTCGAA
ACCGGCGCCG GCGGCTCCGC GCCGAAACAT GTCGAGCAGT TCCTGGCGGA GAACTATCTG
CGCTGGGACA GCCTGGGCGA ATTCTTCGCG CTCGCCGCCT CCCTCGAGCA CTTGAGCCTC
ACGTTCAAGC ACGAGAAGGC CAAGATCCTC GCCGACACGC TCGACGCGGC GACTGCCAAG
TTCCTCGAAA ACGACCGCTC GCCCGGCCGC AAGCTCGGCA CGATCGACAA TCGTGGCAGC
CATTTCTACC TCGCACTCTA CTGGGCGCAG GAGCTCGCGC GACAAAGCCG CGACGCCGAG
CTCAAGCGGA TCTTCATCCC GCTCGCCGCG GAACTCGAAG CCGCAGAGCC GACAATTACC
AGCGAGCTTC TCGCGGTGCA GGGGAAGCCG GCGGATATCG ACGGCTACTA CCGGCCGGAC
GACGTGAAGG CCGCAGCGGC CCTCCGCCCC AGCGCAACCT TCAACCAGAT TCTCGCGACG
CTCTGA
|
|---|
| Protein sequence | MSATPTIIYT KTDEAPALAT YSLLPIVQAF TKHAGIAVET RDISLAGRIL AAFSDLLPAN
QRVADALAEL GALTLKPEAN IIKLPNISAS VPQLKEAIAE LQAKGFALPD YPESPKSDAE
KDAKARYDRV KGSAVNPVLR EGNSDRRAPK AVKDYARKHP HSMGAWSPTS KTRVATMGRD
DFYANEKSVT VPAATTVRIE FESTDGKVTV LKDKLALLAG EIIDGTFMSR KTLDSFLEQQ
VAIARQDGVL FSVHLKATMM KVSDPIIFGH AVRAYFKELL AKHAATFAEL GVDLNNGFGD
LVAKLEKLPP AKKAEIEADI RATYAAGPAV AMVNSDQGIT NLHVPSDVIV DASMPAMIRV
GGKMYDANGK LQDTLAVIPD SSYAGVYQAT IEFCKKHGAF DPRTMGSVPN VGLMAQAAEE
YGSHNKTFHL PSNGTVRVVD AAGRVYLEHA VAAGDIWRAC QAKDAPVRDW VKLAVNRARL
SATPAIFWLD EKRAHDAQLI VKVKAYLADH DTTGLDIKIL PPAAACTATL ERLKAGQDTI
SVTGNVLRDY LTDLFPILEV GTSAKMLSIV PLMKGGGLFE TGAGGSAPKH VEQFLAENYL
RWDSLGEFFA LAASLEHLSL TFKHEKAKIL ADTLDAATAK FLENDRSPGR KLGTIDNRGS
HFYLALYWAQ ELARQSRDAE LKRIFIPLAA ELEAAEPTIT SELLAVQGKP ADIDGYYRPD
DVKAAAALRP SATFNQILAT L
|
|---|
| |