| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Oter_3113 |
|---|
| Symbol | |
|---|
| ID | 6208858 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Opitutus terrae PB90-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010571 |
|---|
| Strand | + |
|---|
| Start bp | 4051867 |
|---|
| End bp | 4053429 |
|---|
| Gene Length | 1563 bp |
|---|
| Protein Length | 520 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 641692779 |
|---|
| Product | putative alpha-isopropylmalate/homocitrate synthase family transferase |
|---|
| Protein accession | YP_001819993 |
|---|
| Protein GI | 182414927 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0119] Isopropylmalate/homocitrate/citramalate synthases |
|---|
| TIGRFAM ID | [TIGR00977] 2-isopropylmalate synthase/homocitrate synthase family protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.0846623 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCACGA GCTTGAAGAT CTACGACACC ACCCTGCGTG ATGGCACGCA GGGCGAAGGC
ATCAGCTTCT CCGTCACCGA CAAGCTCTTG ATTGCGCAGA AGCTGGACCA GTTCGGCGTC
GACTACATCG AAGGCGGATT CCCGGGATCC AATCCCCGCG ACATCTCGTT CTTCGCGGAG
GCGAAAAAGC TGAAGCTCAC GCACGCGAAG CTCGCGGCCT TCGGCGCCAC CCGGCGCGCG
GGCGTAAAGC CCGAGGAAGA CGCCCAGCTG CGCACGCTGA TCGAGAGCGA GATGCCCGTG
CTGACGATCG TCGGCAAAAC GTGGCTCATG CACGTGCACG AGATCCTGCG CACCACGCCG
GAGGAAAACC TGGCGATGAT CGAAGACAGC GTCCGCTACC TCGTCGCCCA GGGCCGTGAG
GTGATCTACG ACGCCGAACA CTTTTTCGAC GGTTATCTCG ACAATTCCGA CTACGCCTTG
CGCACGCTTG AAGCGGCGGC GCGTGGCGGG GCGAGCAATC TCACGCTCTG TGAAACGAAC
GGCGGCAAAC TCGTGCCGGA AGTGCATAAA ATCGCCGCGG CCGCGGTGGC CCGCTTCGGC
CGCGACAAGG TGGGCGTGCA CTGCCACAAC GACAGCGGGC TCGGCGTCGC GGTGACGCTC
GCCGGCGTCG ACGCGGGGGC GTCGCTGGTT CAAGGCACGA TGAACGGCTA CGGCGAACGG
GTCGGCAACG CGAACCTCGT GACGCTCCTG CCGAATCTGT TCCTGAAAAT GGGCCGGACC
GCGAACTGCG CGAAAAACCT GAAGGAGCTG CGCGACCTGT CGCTGTTCTT CGACGAGCTG
GCGAATCTCC GGCCGAATCC GAAGGCGCCA TTCGTCGGTC AGTCAGCCTT CGCGCACAAG
GGCGGTCTGC ATGCCAACGC CGCGCAAAAA GTCGCGCGCA GCTACGAGCA CATCGACCCG
GCGCTCGTGG GCAATCGCAC GCGCGTGCTC GTGTCGGACA TGGCCGGCCG CACCAGCCTG
ACGCTTAAGG CACGCGAGCT GGGCATCGAG CTCGATGAAC GGCTCCCGGC GATGAAAGGG
CTGATCGACG AGCTAAAGGA GCGCGAGTTT CGCGGCTACG AATACGAGGC GGCGGATGCG
TCGTTCCGGC TGCTGATCGC GAAATGGCTC GGCCAGCAGA AAACGTTTTT CGACGTCGAG
AACTACCGCG TCATCATCGA GCGACACAAC AACCAGATCT GGTCAGAAGC GACCGTGAAG
CTGACGGTGA ACGGCGAAGC GATGCACACT GTGGCCGAGG CGAGTGGTCC GGTCGGCGCG
CTCGACAAGG CGCTGCGGCT CGCGCTCGCG AAAGCCTACC CGCAGCTCCA GACGATGTCG
TTGCGCGATT ACAAGGTCCG GATTCTCGAG AGCAATCAAG GCGCCGGCTC GCGCACGCGG
GTGCTGATCG AAAGCGGCAA CGGCAAAAAG ATTTGGGGCA CCGTGGGAGT CAGCGACAAC
ATCATCGACG CCAGCTGGGA AGCGCTGCGG GATTCCGTCG AGTACATGCT GATGCAGAGC
TGA
|
|---|
| Protein sequence | MSTSLKIYDT TLRDGTQGEG ISFSVTDKLL IAQKLDQFGV DYIEGGFPGS NPRDISFFAE
AKKLKLTHAK LAAFGATRRA GVKPEEDAQL RTLIESEMPV LTIVGKTWLM HVHEILRTTP
EENLAMIEDS VRYLVAQGRE VIYDAEHFFD GYLDNSDYAL RTLEAAARGG ASNLTLCETN
GGKLVPEVHK IAAAAVARFG RDKVGVHCHN DSGLGVAVTL AGVDAGASLV QGTMNGYGER
VGNANLVTLL PNLFLKMGRT ANCAKNLKEL RDLSLFFDEL ANLRPNPKAP FVGQSAFAHK
GGLHANAAQK VARSYEHIDP ALVGNRTRVL VSDMAGRTSL TLKARELGIE LDERLPAMKG
LIDELKEREF RGYEYEAADA SFRLLIAKWL GQQKTFFDVE NYRVIIERHN NQIWSEATVK
LTVNGEAMHT VAEASGPVGA LDKALRLALA KAYPQLQTMS LRDYKVRILE SNQGAGSRTR
VLIESGNGKK IWGTVGVSDN IIDASWEALR DSVEYMLMQS
|
|---|
| |