Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Oter_3094 |
Symbol | |
ID | 6207787 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Opitutus terrae PB90-1 |
Kingdom | Bacteria |
Replicon accession | NC_010571 |
Strand | - |
Start bp | 4029134 |
End bp | 4030693 |
Gene Length | 1560 bp |
Protein Length | 519 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 641692759 |
Product | putative PAS/PAC sensor protein |
Protein accession | YP_001819974 |
Protein GI | 182414908 |
COG category | [K] Transcription [T] Signal transduction mechanisms |
COG ID | [COG2208] Serine phosphatase RsbU, regulator of sigma subunit |
TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 8 |
Fosmid unclonability p-value | 0.259313 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGACACGC TGCCGGACCG GATCTACTTC AAAGACCTGG AGAGCCGATT CGTGCGCGTG AACGAGGCCT ACGCGCGGTG GCACGGCTTC GATTCGCCGG CATCGATCAT CGGCAAGACC GACCACGATT TGTTCGCGGC GGTGCACGCC GACGTGGCGC GCACGGAAGA GGAAGCAATC ATTCGCACGG GCGTGCCCAT GGTGGCCAAG GTCGAGAAGC TCACGATGAA GGACGGCAGC GTAGCCTGGG GCTCGGCCAC GAAGATGGCG TGGCGCGACG AATCCGGGCG GATCATCGGC ACCTTCGGCG TCACGCGCGA CGCCACCGCG GCCAAGCTGG CGGAGGAGCG GCTCGTCGAA GAGCGGAACC TGCTGCGCAC GATCATCGAT CACCTGCCGG CGCGCGTCTA CGTCAAGGAC ACCGCGTCGC GCTACCTGCT CAATAATGTC GCACACCTCG CCATGCTCGG ACTCGAGGGC CAGGAACAGG CCACCGGACG AACCATTCTC GACTTCTTCA GCAACGAGCG CGGCCGGCAG GCGTTCAGTG ACGACCGGCA GGTGCTCGAG ACGGGCACGC CGATCCTCAA CCAGGAAAAG TCCGACTTCG GCGCCGGCAG CCAGCTCCAC TGGTCGCTCA CGACCAAGGT GCCGCTGCGC GATCTCGAGC AGCACATCAT CGGCCTGGTC GGAATCAGCC ACGACATCAC GCGCCGCAAG CTGGCCGAAG AGGAGCTGCA ACGCCGCACC AACGAAATGG AGGCGGACGT GCGCATGGCG CGCCAGGTAC AGGAAACGTT TCTCCCGCGC GCGTATCCGG TTTTTCCGCG CGGCGTGCCG GCCGAGGCGA GCGCGCTGCG CTTCGCCCAC CGCTACATTC CCGCGACGAC GCTCGGCGGC GATTTCTTCG ACATCGTGCA GCTCTCCGAC ACGAAATGCG GCGTCCTGGT GTGCGACGTG ATGGGCCACG GCGTGCGTGC CGGTCTGCTG ACAGCGCTGA TTCGCGGCGT CGTCGGCGAA CTGGGCGAAC GCGCGGAAAA TCCCGCGCAC GTGCTCGCCG AGATCAACCA CAGTCTCGCG CCGATCCTCG AGCGCACCGG GCAGCCGGTG TTCGCCACGG CCTTTTTCGG CGTGTTCGAC ACGACCACGA ACACCCTCTC CTACGGCAAC GCCGGCCACC CCTCGCCGCT GATCCGCCGC GCCGCGACCG GCACGGTCGT GCGGCTGTCG TCGGAGGACC CCGAGCCCGC GGCCGGACTG GTGGCCAACT TCGGCTACAC GCGCCGCGAG TGCACGATCG AACCCGGCGA TCTCTTCCTC GGCTACACCG ACGGCGTCAT CGAAGCGCCC GATGCCGCCG GCCAGATCTA CGGCGATAGC CGGCTGATCG GATTCCTGCA GGACAGCATC GGCCAGAGTG GCGAGGAAGT CTGCGCCCGA TTGGTGCGGG ACCTCGCGAC GTTCTCGGGC CATTCGATCT TCGAGGACGA CGTCTGTCTC GTGACGCTGG AGTGCACGGG CCTCGTTTGC CCCGTGCAGA CGGTGTCGTA CGAAATCTAG
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Protein sequence | MDTLPDRIYF KDLESRFVRV NEAYARWHGF DSPASIIGKT DHDLFAAVHA DVARTEEEAI IRTGVPMVAK VEKLTMKDGS VAWGSATKMA WRDESGRIIG TFGVTRDATA AKLAEERLVE ERNLLRTIID HLPARVYVKD TASRYLLNNV AHLAMLGLEG QEQATGRTIL DFFSNERGRQ AFSDDRQVLE TGTPILNQEK SDFGAGSQLH WSLTTKVPLR DLEQHIIGLV GISHDITRRK LAEEELQRRT NEMEADVRMA RQVQETFLPR AYPVFPRGVP AEASALRFAH RYIPATTLGG DFFDIVQLSD TKCGVLVCDV MGHGVRAGLL TALIRGVVGE LGERAENPAH VLAEINHSLA PILERTGQPV FATAFFGVFD TTTNTLSYGN AGHPSPLIRR AATGTVVRLS SEDPEPAAGL VANFGYTRRE CTIEPGDLFL GYTDGVIEAP DAAGQIYGDS RLIGFLQDSI GQSGEEVCAR LVRDLATFSG HSIFEDDVCL VTLECTGLVC PVQTVSYEI
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