| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Oter_2976 |
|---|
| Symbol | |
|---|
| ID | 6207579 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Opitutus terrae PB90-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010571 |
|---|
| Strand | + |
|---|
| Start bp | 3823261 |
|---|
| End bp | 3824148 |
|---|
| Gene Length | 888 bp |
|---|
| Protein Length | 295 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 641692641 |
|---|
| Product | xylose isomerase domain-containing protein |
|---|
| Protein accession | YP_001819857 |
|---|
| Protein GI | 182414791 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG3622] Hydroxypyruvate isomerase |
|---|
| TIGRFAM ID | [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACCCCA CCGCGTCCTT CACCCGTCGC CAGATCCTGA AAACCCTCGG CACCGTGACG
CTGCTCGCGA CGTCGGGCCT GAGCGGTCCC GCACGCGCAG CCGAAGCAGA GGGCGCTCCC
GCGGCGGGCC GCAAGGGCCG GATCAAGCAG GGCATCACGC GCGGTTGTCT GCGCGGGATT
GCGTCGCTCG ACGAAATGGC GGCGATCTGT GCCGAGCTCG GGATCGCCGG CATCGATTTC
GTGGCGCCGA AAGATTTTCC GGTGCTGCAG AAACATGGGT TGATTTGTCC GTGCGTGCAC
AGCGGGAAAT TGACGGAAGG CCTGAACAAT CCCGCGCATC ACGCGGCCAG CCTGGCGAGC
TTGCGGCAGG CGATCGACGA TGCGGCGGCG GCGGGGTACC CGAACGTGCT TTGTTTTTCG
GGCAATCGCG CCGGTATCGA CGACGAGACG GGGCTGCGCG CCTGCACGCG GGCTCTGGAG
CAGGTGATCG GGCTCGCCGA GCAGAAGGGT GTGACGATCT GCATGGAGCT GTTGAACAGC
AAACGAGACC ATCGCGACTA CCAGTGCGAC CGGACGGCGT GGGGCGTGGA GCTCTGCAAG
CGCGTCAACT CGCCGCGGTT CAAGCTGCTC TACGACATCT ACCACATGCA GATCATGGAA
GGCGATGTGA TCTCCACGTT TCGGACGAAC GTGCGTTACA TTGGCCACGT GCACACGGCC
GGGGTGCCGG GTCGCAACGA GATCGACGAG ACGCAGGAGC TCTACTATCC GGCGATCATA
CGCGCGATCG CGGAGAGCGG CTACGCGGGG TACGTCTCGC ACGAATATGG GCCGAAGCGG
AATCCGGTGG AGTCGCTGCG GAGAGCGGTG GAGTTGTGCG ACGTGTGA
|
|---|
| Protein sequence | MNPTASFTRR QILKTLGTVT LLATSGLSGP ARAAEAEGAP AAGRKGRIKQ GITRGCLRGI
ASLDEMAAIC AELGIAGIDF VAPKDFPVLQ KHGLICPCVH SGKLTEGLNN PAHHAASLAS
LRQAIDDAAA AGYPNVLCFS GNRAGIDDET GLRACTRALE QVIGLAEQKG VTICMELLNS
KRDHRDYQCD RTAWGVELCK RVNSPRFKLL YDIYHMQIME GDVISTFRTN VRYIGHVHTA
GVPGRNEIDE TQELYYPAII RAIAESGYAG YVSHEYGPKR NPVESLRRAV ELCDV
|
|---|
| |