| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Oter_2948 |
|---|
| Symbol | |
|---|
| ID | 6205560 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Opitutus terrae PB90-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010571 |
|---|
| Strand | - |
|---|
| Start bp | 3780749 |
|---|
| End bp | 3782266 |
|---|
| Gene Length | 1518 bp |
|---|
| Protein Length | 505 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 641692613 |
|---|
| Product | extracellular ligand-binding receptor |
|---|
| Protein accession | YP_001819829 |
|---|
| Protein GI | 182414763 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.25249 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGTCCAC ACGGTCAGGA TGCCCGTGCC ATCCAGGCTG CTTTTTTCCG CAGCCTCCAC
ACCATCGCCG CGAGTCTCAG TTTGATCGCA CTGGTCCTTG CACCGGTCTG CGCCTCCGCC
GCCGATGCGT CCACGCCTGC CGCCGTTGCC ACCCCCGATC CCGCCGCTGC CGCCATCCTG
CCGCAGCTCG ACACCGGTTA CTACCGGCAG CCCACGCTGC CGCTGAAGCA GAACGAAAAT
TACGCGAAGT CCTCCGCCGA CGTGGAGCCC TACGGTGGCG TGAAGCCTTA CAAGGAGCAC
TTTCTGCTCC AGATGGAATA CGCCGGCGCG GGCCGCGGCC TTCCCGAACC CGAGCACGTG
GACTCGGTGA AGATCGGCTT TCTCGGCCCC ATCAAGCCGA CCGTCTCCGT CGCCACGGGC
GGCAAGAGTC ACAATGAGGA AAAACTCGGC GTCGCGATGA TGCGCGCCGC CACGCTCGCC
ATCGAGGAGG CCAACGCGCA GGGCGGCTAT CTCAAGCGCC GCGTGCCGTT CGAGCTCGCC
GTGCACAACG ACAACGCGCT CTGGGGCGCG TCCGGCAGCG AGGTTGTCGA CATGGCCTAC
AAGGACGGCG TCTGGGCCAT CATCGGCGGC ATCGACGGCG CCAATACTCA CATCGCCATC
CGGGTCGCGC TCAAGATCGA AATCCCCTGG ATGACTCCCG GCGACCTCGA TCCCACCTAC
ATCGAGACCA ACATTCCGTG GGTGATGCGC TGCATTGGTG ACGACCGTCA GCTCAACTAC
CTCCTCGTCG ACTACGCCCT CCGCAAGATG GACTACCAGC GTCCCTGCAT CATCCGCTCG
AGCAACCGCT ACGGGCGTTT CGGCGTGCGC GAGATTCGCG ACAGCTGCCG CCGCATGGGT
CGACCGAGCG TGATCGAAAT GGCCTACAGG GGCGGCGCCA CCGATTTCAC GCTGCAGCTC
GACCGCATCG CCGAGTACAA GCCGGACGTG ATCTTTCATT GGGGCAACGG CGACGACGCC
GCGCGCGTGC TCAACGCGAT CCGCGCCCGC GGTTGGAAGC AGCCGTTCCT CACCTGCGAC
CGTGCGGTCA CCGATGAATT CCTCGAGATC GCCGGCGCCA ACGCCGAGGG CGTCGTCTGC
GCGTACCCGT GGAATCCCGA GCGCCAGGAT CCGAAGCTCG AGGCCTTCCG CGAAGCGTTC
CGAAAACGGT GGGACGCGGA GGCCGACACC TACGCCGCTC ATGCCTACGA CGGCACCAAC
ATGCTGATCT GGGCCATCCA GAATGCCGGT CTGAACCGCG CGAAGATCCG CGATCTGATC
GCTTACCGCA CGGAACCGTT CCACGGCATC ACCGGCGAGA TCCCGCTCAG CTCCGCGATG
GACGACGCCG GTGAAGTTTT CCTTGCGATC CGGGAGGGCG GCAAATGGGT CTACCATTCG
CGCGACGATC TCGGCATTCC GCGCGGCACG GTGATCGAAA AACCCCGCGC CGAGCGCGAG
GTCGCGAGGG CGCAGTGA
|
|---|
| Protein sequence | MRPHGQDARA IQAAFFRSLH TIAASLSLIA LVLAPVCASA ADASTPAAVA TPDPAAAAIL
PQLDTGYYRQ PTLPLKQNEN YAKSSADVEP YGGVKPYKEH FLLQMEYAGA GRGLPEPEHV
DSVKIGFLGP IKPTVSVATG GKSHNEEKLG VAMMRAATLA IEEANAQGGY LKRRVPFELA
VHNDNALWGA SGSEVVDMAY KDGVWAIIGG IDGANTHIAI RVALKIEIPW MTPGDLDPTY
IETNIPWVMR CIGDDRQLNY LLVDYALRKM DYQRPCIIRS SNRYGRFGVR EIRDSCRRMG
RPSVIEMAYR GGATDFTLQL DRIAEYKPDV IFHWGNGDDA ARVLNAIRAR GWKQPFLTCD
RAVTDEFLEI AGANAEGVVC AYPWNPERQD PKLEAFREAF RKRWDAEADT YAAHAYDGTN
MLIWAIQNAG LNRAKIRDLI AYRTEPFHGI TGEIPLSSAM DDAGEVFLAI REGGKWVYHS
RDDLGIPRGT VIEKPRAERE VARAQ
|
|---|
| |